Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACFBML_RS12890 Genome accession   NZ_CP170491
Coordinates   2857026..2857544 (-) Length   172 a.a.
NCBI ID   WP_390338053.1    Uniprot ID   -
Organism   Vibrio harveyi strain LcV6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2852026..2862544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFBML_RS12865 (ACFBML_12865) rimM 2852078..2852626 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  ACFBML_RS12870 (ACFBML_12870) rpsP 2852655..2852903 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  ACFBML_RS12875 (ACFBML_12875) ffh 2853114..2854496 (-) 1383 WP_005446242.1 signal recognition particle protein -
  ACFBML_RS12880 (ACFBML_12880) - 2854710..2855504 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  ACFBML_RS12885 (ACFBML_12885) - 2855659..2856933 (+) 1275 WP_390338051.1 HlyC/CorC family transporter -
  ACFBML_RS12890 (ACFBML_12890) luxS 2857026..2857544 (-) 519 WP_390338053.1 S-ribosylhomocysteine lyase Regulator
  ACFBML_RS12895 (ACFBML_12895) - 2857631..2858194 (-) 564 WP_005448430.1 hypothetical protein -
  ACFBML_RS12900 (ACFBML_12900) gshA 2858256..2859824 (-) 1569 WP_017817672.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19023.79 Da        Isoelectric Point: 4.8563

>NTDB_id=1057690 ACFBML_RS12890 WP_390338053.1 2857026..2857544(-) (luxS) [Vibrio harveyi strain LcV6]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEPQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1057690 ACFBML_RS12890 WP_390338053.1 2857026..2857544(-) (luxS) [Vibrio harveyi strain LcV6]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCATTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCCGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment