Detailed information NTG1057684

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: ACFBML_RS12615
• Genome accession: NZ_CP170491
• Coordinates: 2786428..2789814 (+)
• Length: 1128 a.a.
• NCBI ID: WP_009698734.1
• Uniprot ID: A0A9X3MHF7
• Organism: Vibrio harveyi strain LcV6
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2781428..2794814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFBML_RS12590 (ACFBML_12590)	erpA	2781769..2782110 (-)	342	WP_005449174.1	iron-sulfur cluster insertion protein ErpA	-
ACFBML_RS12595 (ACFBML_12595)	hemL	2782357..2783652 (+)	1296	WP_026000215.1	glutamate-1-semialdehyde 2,1-aminomutase	-
ACFBML_RS12600 (ACFBML_12600)	-	2784012..2785097 (+)	1086	WP_005449176.1	AI-2E family transporter	-
ACFBML_RS12605 (ACFBML_12605)	rsmC	2785174..2786199 (+)	1026	WP_005449178.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
ACFBML_RS12610 (ACFBML_12610)	-	2786196..2786429 (-)	234	WP_390338018.1	hypothetical protein	-
ACFBML_RS12615 (ACFBML_12615)	chiS	2786428..2789814 (+)	3387	WP_009698734.1	response regulator	Regulator
ACFBML_RS12620 (ACFBML_12620)	-	2790634..2792316 (+)	1683	WP_005446317.1	ABC transporter substrate-binding protein	-
ACFBML_RS12625 (ACFBML_12625)	-	2792487..2793473 (+)	987	WP_005446316.1	ABC transporter permease	-
ACFBML_RS12630 (ACFBML_12630)	-	2793476..2794501 (+)	1026	WP_009698735.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127417.17 Da
• Isoelectric Point: 5.3912

>NTDB_id=1057684 ACFBML_RS12615 WP_009698734.1 2786428..2789814(+) (chiS) [Vibrio harveyi strain LcV6]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGHDIDEARENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNYGTNLLTGRYKDTALGRTFKRLSEDVSARRKVNEDYTPVVVSDFDIENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIAEINRDSSIETLLVGSDHKPRTINTKQEEIQNSLEIVDKALAGDTEVGTYSNRLGEE
MIAAFAPIETRGLTWAIVVQLPEKEAFARVHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATVVDDQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLANEEEIQATQSLAARGHFQIPEANFENNDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASKAEMRHIENKLLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELMREVLVDTMTHA
LEYWESVTGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KMQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=1057684 ACFBML_RS12615 WP_009698734.1 2786428..2789814(+) (chiS) [Vibrio harveyi strain LcV6]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGCCTGCAAAGCACGCTAATGACCGCGTTTTTGGTTCTTAGTATCAC
GCCACTGACGATCACTGCGATTTTCTTCCTGCAATCACACAGTAAAGATCTTCAAGAACAAAGCACATCGCACCTTCTTT
CAGTTCGTGATACCAAACAACAACAAATCATCGACTACTTTGCAGCTCAAGAGACTGAAGTCATGGGCTTCGTACGCTCC
GAACTTGCTTACGCCAGCGGCGGACGATTCTACGGTTTGGTCAATGCGTTTAGTCGCTTGGGTCACGATATTGATGAAGC
CAGAGAAAACGCACAGCAGCGCTATATCAAAGGCAGTGGCGATCAAATCAAAACCTCGATTTTACCGGAATCATCTAACT
ACGTTGGCAGCGAACGTTACCGCCTATTGCACAAACGTTACCACTGGGCATACCTAGAGCTGTTAAAGCGATCTGATTTT
AATGACATTTTATTGGTTGATATCGATGGTAATGTCACTTACTCAATCAATAAAGACGACAACTATGGCACTAACCTACT
GACAGGACGCTACAAAGATACGGCGCTAGGGCGCACCTTTAAACGTTTGTCTGAAGATGTGAGTGCACGTCGTAAGGTTA
ATGAAGATTACACGCCAGTTGTCGTGTCTGACTTTGATATCGAAAACGGTAAACAAGTCGCTTGGCTCGGCGCACCGATT
GTCCAACAAGGCTACCTGCACAGCTATGCGATGTTCCGCTTACCAAACAACGGCATTACTAAGCTTATTGCTGAAATCAA
CCGCGATTCCTCGATTGAAACCTTACTAGTGGGCAGCGATCATAAACCTCGAACCATTAACACCAAACAGGAAGAAATCC
AAAACAGCTTAGAGATTGTCGATAAAGCACTCGCAGGCGACACAGAAGTAGGTACTTACAGCAACCGCTTGGGTGAAGAG
ATGATTGCGGCATTTGCGCCAATTGAAACTCGCGGTCTAACTTGGGCGATTGTCGTACAACTTCCAGAAAAAGAAGCCTT
TGCTCGAGTCCACCAGCTCGAGAAGCTGTTTGTTATTGCGATGCTGATTGCGATCATCTTGGTTGTGATCGCCTCACACT
ACTTATCTAATTTCATCACCTCCCCGCTTCTTAAGCTGACTTGGGCAGCAGAGAAAGTATCTGCTGGTGATCTGGACGAA
ACGACCTTTAATACAGAGCGTAAAGATGAAATCGGTCGACTCGCGATCAGCTTTGAGCGCATGCAACGCTCAATTCGAGA
AAAGATCCAAACCATTAAGCAGCAAAATGAAGAGCTAGAAAGCAACATCAAATTGATCCAAAAGCAAAACGAAGAATTGC
AGTTGGCAGATAAGCTGAAAGATGAGTTCCTAGCGACAACCTCTCACGAGTTACGTACACCATTACACGGTATGGTCGGC
ATTGCAGAGACTTTAGTATCTGGTGCTAATGGTGCAATTCCTGCGAGTCAAAAATACCAATTGGATATCATCATCAAAAG
TGGTCAACGTTTGGCAAATCTTGTTGACGATTTATTGGATTACCACAAGATGCGCTATGGCAGCATGGATATCCAAAAAT
CGGCAGTGAGCCTAGCAAGTGCGACTCGCTTGGTGCTTGAGCTTTCAAGTCATCTACTAGGTAACAAGACGATTCGTATC
ATTAACCAGGTCCCTGCCGATCTAAAAGCGGTGTCTGCCGATCCACAACGCTTGGAACAAGTACTGTACAACCTAATTGG
TAATGCAATTAAATATACTTCTGAAGGTAAGATCGTAATTTCTGCCACCGTCGTGGACGATCAAGTCCGCGTACAAGTGG
TTGATACTGGCCAGGGTATCCCGGCTGAACATCTTGAGCATATCTTTGAACCTTTAATTCAAGCCGGCCAAGACGCTAGT
CGCTACCGTCAAGGCGCTGGTTTGGGTTTATCAATCAGCCGTCAACTTATCGAATTGATGGGTGGATCGTTATATGTAAG
TAGTCAACCAATGGTCGGCACTACATTTAGCTTTACTCTGCCACTTGCTAATGAAGAAGAGATTCAAGCAACACAGAGCC
TTGCGGCGCGTGGACACTTCCAAATTCCAGAAGCGAACTTTGAAAACAACGACGACTTATCATTACCAGAGAACCCTGAT
GGTCCGCTGTTGTATGTTGCTGATGACGAACCGGTTAACTTACGCGTTCTTGAAAGCTTCCTAAGGCTTGAAGGCTACCG
CGTACGCACTATTTCTGATGGTCCTGAAACACTTGCTTTAATCGAGCAAGAAAAACCAGAGTTGCTTCTACTCGATATCA
TGATGCCAGGCATGAGCGGCTACCAAGTATGTAGTGAGCTTAGAGAGACCTATGATCACGCAGAGCTTCCAATCATTATG
TTGACAGCATTAAGTCAGACAGAAGATCGAGTAAGAGGCTTCGAAGCAGGTGCGAATGACTACTTAACCAAGCCATTCAA
TAAGCAGGAACTCGCCGCACGTATTCAAGCGCACTTAACCGCAAGTAAAGCAGAAATGCGCCACATCGAGAACAAGTTAC
TGGAATCGGAGCTGCGCCAGCGTGCTGAAGTAGAAGCTAGCTTGCTTGAGACTCAAGGTCGATTATTAGAACAACTAGAA
TCAGCACCTGAAGCCATTATTTGCCTTCGCGAGGATCAACGTATTCGCTTTGCGAACGAAGCGGCATGTAAGCTATTTAA
ACGCAGCTTAGAGCAGTTAAAACGCTCTTCGGCAGATGAACTTATTGCACCTAAATTCCTGACAGTTAAACAACCACATT
ACTGTGGCAAGATTGATATTTACATCGAAGATATTCGTCAAAACATTGAAGCAGACATTCTCAAACTACCTGAAGGCTCT
GGTCTAGATGTTATGTACATCTTTAACGTAGGCGGTGGTGCAAACGCAGCTCGTATCCATAATCTAGAAACCGCGGTTGA
AGTTCTATCAAGTTATGCGTTTGATGGTGATAAAGACCAATTGCAGAAGCTGAAAGAACTTGGCGGTGAGTTTACTCGCC
TTGCAGATAAAGCATTGGGGAACAAGAAAGATAAACAAGAGCTGATGCGCGAAGTATTGGTCGATACGATGACTCATGCA
TTGGAATACTGGGAATCAGTGACTGGAGAAACTAAGTTTGCTTTTGCGGAGCAAAGTGGTTTATGGCGTGTCTACCTCGA
CCGCAGTACGTTGCAAACTCGGACACTCGATAAATACATGCGCATTGAGACATTACCAAAAACACCGCGCTGGAGAACGG
TTCTAAGCTCAATCGAGTTCATTCTTGAGCACTGTAAAGAACAAAGCCCTGAACGAGCTTACATTGAAGCGCAACGCGAT
AAAATGCAAAGGCTTCTTACAAGTTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (726-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.705	100	0.768