Detailed information NTG1057671

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACFBML_RS01215
• Genome accession: NZ_CP170491
• Coordinates: 264391..265398 (-)
• Length: 335 a.a.
• NCBI ID: WP_005450580.1
• Uniprot ID: K5TI37
• Organism: Vibrio harveyi strain LcV6
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 259391..270398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFBML_RS01195 (ACFBML_01195)	-	259956..260873 (-)	918	WP_005450584.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ACFBML_RS01200 (ACFBML_01200)	hslU	261182..262513 (-)	1332	WP_009698879.1	HslU--HslV peptidase ATPase subunit	-
ACFBML_RS01205 (ACFBML_01205)	hslV	262543..263094 (-)	552	WP_009698878.1	ATP-dependent protease subunit HslV	-
ACFBML_RS01210 (ACFBML_01210)	-	263680..264225 (-)	546	WP_017817240.1	SPOR domain-containing protein	-
ACFBML_RS01215 (ACFBML_01215)	cytR	264391..265398 (-)	1008	WP_005450580.1	DNA-binding transcriptional regulator CytR	Regulator
ACFBML_RS01220 (ACFBML_01220)	priA	265605..267806 (-)	2202	WP_239969559.1	primosomal protein N'	-
ACFBML_RS01225 (ACFBML_01225)	rpmE	268103..268324 (+)	222	WP_005450576.1	50S ribosomal protein L31	-
ACFBML_RS01230 (ACFBML_01230)	rpsJ	268781..269092 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
ACFBML_RS01235 (ACFBML_01235)	rplC	269107..269736 (+)	630	WP_005435072.1	50S ribosomal protein L3	-
ACFBML_RS01240 (ACFBML_01240)	rplD	269754..270356 (+)	603	WP_005435074.1	50S ribosomal protein L4	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36918.48 Da
• Isoelectric Point: 5.9796

>NTDB_id=1057671 ACFBML_RS01215 WP_005450580.1 264391..265398(-) (cytR) [Vibrio harveyi strain LcV6]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKEEQYSIVADFSFEGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide

• Length: 1008 bp

>NTDB_id=1057671 ACFBML_RS01215 WP_005450580.1 264391..265398(-) (cytR) [Vibrio harveyi strain LcV6]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCTACGGTATCGCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCATCAACAAGAAAGAGAGTGGAAGATGCCGTACTTGAAGCTGGTTATTCACCGAATTCATTAGCTCGTAATT
TACGTAGAAATGAATCAAAGACCATTGTCACTATCGTACCGGACATATGCGATCCGTATTTCTCTGAAATCATTCGCGGT
ATCGAAGATGCAGCAATGGAACACGGTTACCTAGTTCTTCTCGGCGATAGCGGTCAGCAAAAAAAGCGCGAAAGCTCATT
CGTAAACTTAGTATTCACCAAGCAAGCTGATGGCATGTTACTACTGGGCACCGACTTACCATTCGATGTCAGCAAGCCAG
AGCAGAAAAACCTACCACCAATGGTCATGGCGTGCGAATTCGCTCCTGAGCTGGAACTACCAACGGTGCATATCGATAAC
TTGACCTCTGCATTTGAAGCCGTGAACTACCTGACGCAACTTGGTCACAAGCGTATTGCTCAGATCTCCGGTCCAGATAC
TGCGGTGCTGTGCCAGTTCCGCCAACAAGGTTACCAACAAGCACTTCGCCGTGCTGGTATTAGTAAAGAAGAGCAATACA
GCATTGTGGCTGACTTCTCTTTCGAAGGTGGCGTTCAAGCCGTACGCAAACTTCTCGAATTGCCTGAACCACCAACCGCT
CTATTCTGTCACTGCGACACCATGGCGATTGGTGCTATCCAAGAAGCGAAACGTCTTGGTCTGCGTATTCCGCAGGATTT
ATCGGTTGTCGGCTTTGATGATATTCAATTCGCGCAATACTGCGATCCACCGTTAACCACCATCTCTCAACCACGTTATG
AGATTGGTCGCCAAGCAATGTTAATGATGCTAGAGCTACTGAAAGGTCACGATGTGCACTCAGGCTCTCGCTTGCTTGAA
ACTAAATTAGTTGTGCGTGGTAGTGCAGCACCACCACCTTTGCGCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: K5TI37

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	96.386	99.104	0.955
cytR	Vibrio cholerae C6706	90.663	99.104	0.899