Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABW392_RS00445 Genome accession   NZ_AP028457
Coordinates   114024..115865 (+) Length   613 a.a.
NCBI ID   WP_217716903.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain JCM 19861     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 109024..120865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABW392_RS00420 (B19861_00800) thiF 109081..109794 (-) 714 WP_117319782.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  ABW392_RS00425 (B19861_00810) thiS 109847..110041 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  ABW392_RS00430 (B19861_00820) - 110489..111457 (+) 969 WP_347309438.1 aldo/keto reductase -
  ABW392_RS00435 (B19861_00830) - 111641..112132 (+) 492 WP_151918227.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABW392_RS00440 (B19861_00840) rcrP 112261..114012 (+) 1752 WP_080863094.1 ABC transporter ATP-binding protein Regulator
  ABW392_RS00445 (B19861_00850) rcrQ 114024..115865 (+) 1842 WP_217716903.1 ABC transporter ATP-binding protein Regulator
  ABW392_RS00450 (B19861_00860) - 116036..117016 (+) 981 WP_217716902.1 aldo/keto reductase -
  ABW392_RS00455 (B19861_00870) - 117030..118082 (-) 1053 WP_347309437.1 FAD:protein FMN transferase -
  ABW392_RS00460 (B19861_00880) - 118822..120609 (+) 1788 WP_420492495.1 FTR1 family iron permease -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67316.12 Da        Isoelectric Point: 6.9488

>NTDB_id=105758 ABW392_RS00445 WP_217716903.1 114024..115865(+) (rcrQ) [Bifidobacterium adolescentis strain JCM 19861]
MPRGMGRGRGAVEKPKDFGGVMKKLVKFCSRYIPVMIFALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMNS
IDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQQLREAISQKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSVGSLITSITLFFGALIMMFYNNVTMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQVALGDVNGHVEEMYTGHTVVK
AYCGEERSIEQFEKYNKDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAALAMDGKIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLDEPELADETGKRALLGVGADGKPQPVRGDVEFSHVRFGYDADKTIINDFSASVKAG
QKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQI
VAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKGGFYADIYNSQFTLAE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=105758 ABW392_RS00445 WP_217716903.1 114024..115865(+) (rcrQ) [Bifidobacterium adolescentis strain JCM 19861]
ATGCCAAGAGGAATGGGACGCGGCCGTGGGGCCGTGGAAAAGCCGAAGGACTTCGGCGGAGTGATGAAGAAGCTCGTGAA
ATTCTGCAGCCGGTACATTCCGGTGATGATTTTCGCGCTGGTTCTGGGCGCTGCCGGCACGGTGTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCACGAAGGGTCTGCCGGCCATGGTGCACGGCAAGCCCGTCATGAATTCG
ATCGATATGGACGCGGTGTCGCGCATCGCATGGCTGCTCGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGCTACCTGCA
AAGCTGGCTGATGGCCAACGTCACGCAACGCACGGCACAGCAGCTACGTGAGGCGATCAGCCAGAAAATCAATCGCCTGC
CGCTGAAATATTTCGACAAAGTCAGCTACGGCGACGTGCTGAGCCGCATCACCAACGACGTCGACGCGATCGGACAGACG
CTCGGCCAGTCGGTCGGCTCGCTGATCACATCGATCACGCTGTTCTTCGGCGCGCTCATCATGATGTTCTACAACAACGT
GACCATGACGCTGTGCGCCATCGGCTCCGCGCTGCTCGGCCTGATCATCATGGGCGTGATCATGAAGGTGTCGCAGAAGT
ACTTCACCCGCCAGCAGGTGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAAATGTACACCGGCCACACCGTGGTCAAG
GCATACTGCGGCGAGGAACGCTCCATCGAGCAGTTCGAGAAGTACAACAAAGACCTGTACGTGTCCGGCTGGAAAAGCCA
GTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTCGTCGGCAACTTCGGATACGTGGTGGTGTGCGTGGTCGGCGCGG
CGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTG
TCCCAGTTCGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCAGCCGCATCCGAACGCGTCTTCGGCTTCCTTGACGAACC
GGAACTGGCCGACGAAACCGGCAAGCGGGCGTTGCTCGGCGTCGGCGCGGACGGCAAGCCGCAGCCGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGCTTCGGCTACGACGCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAGGCCGGC
CAGAAGGTGGCTATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTACGAGATTTC
CGGTGGCACGATTTCGATCGACGGCATCGACACCAAGTCCGTACCGCGTTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGCCCGGCGTCACCGACGAGCAGATT
GTGGCCGCATGCAAGGCCGTCGGCCTGCACCACTACATCATGTCGTTGCCGAACGGCTACGACACCGTGCTCGACGACAA
GGCGTCGCTTTCCCAGGGCCAGCGCCAGCTGCTGACGATCGCCCGCGCCATGGTGGAGGACGCGCCGATCCTGATTCTTG
ACGAAGCCACCTCCTCGGTCGATACACGCACCGAGGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGCCGCACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACGCACGAGGAACTGCTCGCCAAGGGCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCCGAGT
GA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(36-320)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.484

96.411

0.525

Multiple sequence alignment