Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABW392_RS00440 Genome accession   NZ_AP028457
Coordinates   112261..114012 (+) Length   583 a.a.
NCBI ID   WP_080863094.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain JCM 19861     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 107261..119012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABW392_RS00415 (B19861_00790) - 108010..108924 (-) 915 WP_080703707.1 thiazole synthase -
  ABW392_RS00420 (B19861_00800) thiF 109081..109794 (-) 714 WP_117319782.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  ABW392_RS00425 (B19861_00810) thiS 109847..110041 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  ABW392_RS00430 (B19861_00820) - 110489..111457 (+) 969 WP_347309438.1 aldo/keto reductase -
  ABW392_RS00435 (B19861_00830) - 111641..112132 (+) 492 WP_151918227.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABW392_RS00440 (B19861_00840) rcrP 112261..114012 (+) 1752 WP_080863094.1 ABC transporter ATP-binding protein Regulator
  ABW392_RS00445 (B19861_00850) rcrQ 114024..115865 (+) 1842 WP_217716903.1 ABC transporter ATP-binding protein Regulator
  ABW392_RS00450 (B19861_00860) - 116036..117016 (+) 981 WP_217716902.1 aldo/keto reductase -
  ABW392_RS00455 (B19861_00870) - 117030..118082 (-) 1053 WP_347309437.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64483.58 Da        Isoelectric Point: 5.3140

>NTDB_id=105757 ABW392_RS00440 WP_080863094.1 112261..114012(+) (rcrP) [Bifidobacterium adolescentis strain JCM 19861]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITQLVETPGSEMRDIWVAGGKMLLVSLGSAACAIVTGFIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLVVIAVLMHFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTVMNGLMLAVYWIGAYLIDAADAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVTDGTQDAGKPGEEGEIEFRNVSFAYPDSRQAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=105757 ABW392_RS00440 WP_080863094.1 112261..114012(+) (rcrP) [Bifidobacterium adolescentis strain JCM 19861]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATAGGCCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGGCAGAT
CTGGCTTGACCTGACCCTGCCGGACTACATGGCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGCGAAATGCGCGACA
TCTGGGTGGCCGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCGGCGGCCTGCGCCATCGTCACCGGCTTCATCGCCGCG
CGCGTGGGCGCCTCGTTCAGCCAGCGCCTGCGTTCGCTCGAATTCAACAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGCTCATGCACTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCGTACAACGCCGAGG
ACTACCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAGACCCAGCTGTTCACCAACCGTGCCATGGCCATC
ATGATGCCGTTGATGAACACCGTCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTCATCGACGCTGC
CGACGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGAGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCACCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCAGGCCATGTTGGAAGGCGTCAATTTCAAAGCCAAGAAGGGTCAGACGGTGGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTATGATTCCGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAACTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.419

100

0.516

Multiple sequence alignment