Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACFKQE_RS04890 Genome accession   NZ_CP170447
Coordinates   1025894..1026547 (-) Length   217 a.a.
NCBI ID   WP_004918078.1    Uniprot ID   A0AAP6LJM8
Organism   Riemerella anatipestifer strain PAT3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1020894..1031547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKQE_RS04875 (ACFKQE_04875) - 1021713..1022795 (-) 1083 WP_154469319.1 serine hydrolase -
  ACFKQE_RS04880 (ACFKQE_04880) - 1022907..1024562 (-) 1656 WP_154469318.1 ribonucleoside-diphosphate reductase subunit alpha -
  ACFKQE_RS04885 (ACFKQE_04885) - 1024610..1025584 (-) 975 WP_064971216.1 ribonucleotide-diphosphate reductase subunit beta -
  ACFKQE_RS04890 (ACFKQE_04890) comF 1025894..1026547 (-) 654 WP_004918078.1 ComF family protein Machinery gene
  ACFKQE_RS04900 (ACFKQE_04900) - 1026769..1027320 (-) 552 WP_229578814.1 hypothetical protein -
  ACFKQE_RS04905 (ACFKQE_04905) - 1027372..1028022 (-) 651 WP_154469317.1 HD domain-containing protein -
  ACFKQE_RS04910 (ACFKQE_04910) gdhA 1028154..1029512 (-) 1359 WP_049334426.1 NADP-specific glutamate dehydrogenase -
  ACFKQE_RS04915 (ACFKQE_04915) dprA 1029696..1030799 (-) 1104 WP_154469316.1 DNA-processing protein DprA Machinery gene
  ACFKQE_RS04920 (ACFKQE_04920) - 1030802..1031179 (-) 378 WP_154469315.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25339.46 Da        Isoelectric Point: 9.4150

>NTDB_id=1057470 ACFKQE_RS04890 WP_004918078.1 1025894..1026547(-) (comF) [Riemerella anatipestifer strain PAT3]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1057470 ACFKQE_RS04890 WP_004918078.1 1025894..1026547(-) (comF) [Riemerella anatipestifer strain PAT3]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1

Multiple sequence alignment