Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   ACFIOR_RS06305 Genome accession   NZ_CP170409
Coordinates   1207599..1208669 (+) Length   356 a.a.
NCBI ID   WP_168768458.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t359     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1202599..1213669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOR_RS06275 - 1203022..1204485 (+) 1464 WP_001017867.1 rhomboid family protein -
  ACFIOR_RS06280 - 1204466..1204669 (+) 204 WP_000087561.1 YqgQ family protein -
  ACFIOR_RS06285 - 1204666..1205652 (+) 987 WP_000161314.1 ROK family glucokinase -
  ACFIOR_RS06290 - 1205652..1205981 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACFIOR_RS06295 - 1205978..1206601 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ACFIOR_RS06300 comGA 1206653..1207627 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ACFIOR_RS06305 comGB 1207599..1208669 (+) 1071 WP_168768458.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACFIOR_RS06310 comGC 1208683..1208994 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFIOR_RS06315 comGD 1208972..1209418 (+) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACFIOR_RS06320 comGE 1209405..1209704 (+) 300 WP_199915398.1 competence protein ComGE Machinery gene
  ACFIOR_RS06325 comGF 1209622..1210119 (+) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACFIOR_RS06330 - 1210216..1210362 (+) 147 WP_001789879.1 hypothetical protein -
  ACFIOR_RS06335 - 1210352..1210876 (+) 525 WP_001015121.1 shikimate kinase -
  ACFIOR_RS06340 gcvT 1211035..1212126 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  ACFIOR_RS06345 gcvPA 1212146..1213492 (+) 1347 WP_042727693.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41471.89 Da        Isoelectric Point: 10.1113

>NTDB_id=1056893 ACFIOR_RS06305 WP_168768458.1 1207599..1208669(+) (comGB) [Staphylococcus aureus strain t359]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYRNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQLMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1056893 ACFIOR_RS06305 WP_168768458.1 1207599..1208669(+) (comGB) [Staphylococcus aureus strain t359]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAGAAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAATTGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994

Multiple sequence alignment