Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8630_RS03280 Genome accession   NZ_AP028414
Coordinates   630653..631090 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain IDH-12583     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 625653..636090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8630_RS03260 (I12583_06430) kdpD 626142..627965 (+) 1824 WP_251825566.1 sensor histidine kinase -
  R8630_RS03265 (I12583_06440) uvrB 628067..630040 (-) 1974 WP_002856888.1 excinuclease ABC subunit UvrB -
  R8630_RS03270 (I12583_06450) - 630194..630424 (+) 231 WP_002852327.1 hypothetical protein -
  R8630_RS03275 (I12583_06460) - 630414..630656 (+) 243 WP_002854947.1 hypothetical protein -
  R8630_RS03280 (I12583_06470) Cj0683 630653..631090 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8630_RS03285 (I12583_06480) priA 631072..632925 (+) 1854 WP_002856756.1 primosomal protein N' -
  R8630_RS03290 (I12583_06490) cipA 632935..634329 (-) 1395 WP_317667482.1 DUF2972 domain-containing protein -
  R8630_RS03295 (I12583_06500) ispG 634475..635548 (+) 1074 WP_002857157.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=105676 R8630_RS03280 WP_002852324.1 630653..631090(+) (Cj0683) [Campylobacter jejuni strain IDH-12583]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=105676 R8630_RS03280 WP_002852324.1 630653..631090(+) (Cj0683) [Campylobacter jejuni strain IDH-12583]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment