Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACFION_RS06195 Genome accession   NZ_CP170399
Coordinates   1209037..1209483 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t127     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204037..1214483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFION_RS06160 - 1204531..1204734 (+) 204 WP_000087561.1 YqgQ family protein -
  ACFION_RS06165 - 1204731..1205717 (+) 987 WP_000161314.1 ROK family glucokinase -
  ACFION_RS06170 - 1205717..1206046 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACFION_RS06175 - 1206043..1206666 (+) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  ACFION_RS06180 comGA 1206718..1207692 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ACFION_RS06185 comGB 1207664..1208734 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACFION_RS06190 comGC 1208748..1209059 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFION_RS06195 comGD 1209037..1209483 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACFION_RS06200 comGE 1209470..1209769 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  ACFION_RS06205 comGF 1209687..1210184 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACFION_RS06210 - 1210281..1210427 (+) 147 WP_001789879.1 hypothetical protein -
  ACFION_RS06215 - 1210417..1210941 (+) 525 WP_001015121.1 shikimate kinase -
  ACFION_RS06220 gcvT 1211100..1212191 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  ACFION_RS06225 gcvPA 1212211..1213557 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=1056729 ACFION_RS06195 WP_001788899.1 1209037..1209483(+) (comGD) [Staphylococcus aureus strain t127]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1056729 ACFION_RS06195 WP_001788899.1 1209037..1209483(+) (comGD) [Staphylococcus aureus strain t127]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment