Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ACFIOJ_RS03480 Genome accession   NZ_CP170391
Coordinates   707659..708375 (-) Length   238 a.a.
NCBI ID   WP_410533588.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21642     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 702659..713375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOJ_RS03460 - 703743..704693 (+) 951 WP_410533584.1 LacI family DNA-binding transcriptional regulator -
  ACFIOJ_RS03465 - 704842..706326 (+) 1485 WP_054189589.1 sucrose-6-phosphate hydrolase -
  ACFIOJ_RS03470 - 706323..707282 (+) 960 WP_410533586.1 carbohydrate kinase family protein -
  ACFIOJ_RS03475 - 707479..707587 (-) 109 Protein_680 hypothetical protein -
  ACFIOJ_RS03480 agrA 707659..708375 (-) 717 WP_410533588.1 quorum-sensing response regulator AgrA Regulator
  ACFIOJ_RS03485 agrC 708394..709686 (-) 1293 WP_410533590.1 quorum-sensing sensor histidine kinase AgrC -
  ACFIOJ_RS03490 agrD 709711..709851 (-) 141 WP_001094303.1 cyclic lactone autoinducer peptide AgrD -
  ACFIOJ_RS03495 - 709853..710416 (-) 564 WP_410533592.1 accessory gene regulator AgrB -
  ACFIOJ_RS03500 hld 710706..710786 (+) 81 WP_000046022.1 delta-hemolysin -
  ACFIOJ_RS03505 - 711385..712170 (-) 786 WP_410533594.1 carbon-nitrogen family hydrolase -
  ACFIOJ_RS03510 - 712491..713117 (-) 627 WP_410533596.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27894.88 Da        Isoelectric Point: 6.3001

>NTDB_id=1056589 ACFIOJ_RS03480 WP_410533588.1 707659..708375(-) (agrA) [Staphylococcus aureus strain t21642]
MKIFICEDDSKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDNRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1056589 ACFIOJ_RS03480 WP_410533588.1 707659..708375(-) (agrA) [Staphylococcus aureus strain t21642]
ATGAAAATTTTCATTTGCGAAGACGATTCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATTGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACCGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGATCCA
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACTTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCAAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCCGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACTAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATAATCGCTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.16

100

0.992

Multiple sequence alignment