Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   O1Q79_RS05660 Genome accession   NZ_CP170386
Coordinates   1186903..1187427 (-) Length   174 a.a.
NCBI ID   WP_386690751.1    Uniprot ID   -
Organism   Lonepinella sp. MS14434     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1181903..1192427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q79_RS05645 (O1Q79_01129) comQ 1185203..1185469 (-) 267 WP_386690744.1 DUF5374 domain-containing protein Machinery gene
  O1Q79_RS05650 (O1Q79_01130) - 1185483..1186169 (-) 687 WP_386690747.1 DUF2572 family protein -
  O1Q79_RS05655 (O1Q79_01131) - 1186175..1186906 (-) 732 WP_386690750.1 hypothetical protein -
  O1Q79_RS05660 (O1Q79_01132) comN 1186903..1187427 (-) 525 WP_386690751.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  O1Q79_RS05685 (O1Q79_01137) pal 1188246..1188701 (-) 456 WP_386690753.1 peptidoglycan-associated lipoprotein Pal -
  O1Q79_RS05690 (O1Q79_01138) tolB 1188725..1190017 (-) 1293 WP_386693355.1 Tol-Pal system beta propeller repeat protein TolB -
  O1Q79_RS05695 (O1Q79_01139) tolA 1190086..1191267 (-) 1182 WP_386690755.1 cell envelope integrity protein TolA -
  O1Q79_RS05700 (O1Q79_01140) tolR 1191283..1191708 (-) 426 WP_132301164.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19999.90 Da        Isoelectric Point: 8.4799

>NTDB_id=1056518 O1Q79_RS05660 WP_386690751.1 1186903..1187427(-) (comN) [Lonepinella sp. MS14434]
MKSGFTLFEMLIVLLIISIISLISMPAWQSDSQRILAKEQHRLYLFLRQIQARVENSTQIWYLILNRDIGQQRWCVTAQI
KSDTTCDCFNPSFCPDNLSAQFYYPFSSQKTMITAKAYYPQKLISFNGTRNSSDSGCFMLQNSQSRTLFSFSNLGRIRLK
SDQAENACNSGVEE

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1056518 O1Q79_RS05660 WP_386690751.1 1186903..1187427(-) (comN) [Lonepinella sp. MS14434]
ATGAAAAGTGGTTTTACCTTATTTGAAATGCTTATTGTTTTGCTGATTATTAGCATCATATCTTTAATTAGCATGCCGGC
ATGGCAAAGTGATAGTCAACGAATTTTAGCCAAAGAACAACACCGTTTATATCTATTCTTACGCCAAATTCAAGCCAGAG
TAGAAAATTCTACTCAAATCTGGTATCTCATTCTCAATCGAGATATTGGTCAGCAACGCTGGTGTGTCACCGCTCAAATT
AAGTCAGATACGACTTGCGATTGCTTTAATCCCAGTTTTTGTCCTGATAACCTTTCGGCTCAGTTTTATTATCCTTTTAG
TTCACAAAAAACCATGATTACTGCTAAAGCCTATTATCCACAAAAATTAATCAGTTTTAATGGCACGAGAAATTCGTCAG
ATTCAGGCTGTTTTATGTTGCAAAATTCGCAATCTCGTACCTTATTTTCTTTTTCTAACTTAGGACGAATCCGTTTGAAA
AGTGATCAAGCAGAGAATGCCTGCAATTCTGGAGTGGAAGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

52.941

97.701

0.517

Multiple sequence alignment