Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   O1Q79_RS05645 Genome accession   NZ_CP170386
Coordinates   1185203..1185469 (-) Length   88 a.a.
NCBI ID   WP_386690744.1    Uniprot ID   -
Organism   Lonepinella sp. MS14434     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1180203..1190469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q79_RS05635 (O1Q79_01127) - 1180480..1181700 (-) 1221 WP_386689788.1 ROK family protein -
  O1Q79_RS05640 (O1Q79_01128) recC 1181774..1185169 (-) 3396 WP_386690742.1 exodeoxyribonuclease V subunit gamma -
  O1Q79_RS05645 (O1Q79_01129) comQ 1185203..1185469 (-) 267 WP_386690744.1 DUF5374 domain-containing protein Machinery gene
  O1Q79_RS05650 (O1Q79_01130) - 1185483..1186169 (-) 687 WP_386690747.1 DUF2572 family protein -
  O1Q79_RS05655 (O1Q79_01131) - 1186175..1186906 (-) 732 WP_386690750.1 hypothetical protein -
  O1Q79_RS05660 (O1Q79_01132) comN 1186903..1187427 (-) 525 WP_386690751.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  O1Q79_RS05685 (O1Q79_01137) pal 1188246..1188701 (-) 456 WP_386690753.1 peptidoglycan-associated lipoprotein Pal -
  O1Q79_RS05690 (O1Q79_01138) tolB 1188725..1190017 (-) 1293 WP_386693355.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9977.58 Da        Isoelectric Point: 8.4982

>NTDB_id=1056517 O1Q79_RS05645 WP_386690744.1 1185203..1185469(-) (comQ) [Lonepinella sp. MS14434]
MGLVTLLVALSLFSGIFLAINQWANIQRKTASEIYQRYQAIQIAENQQQRQFLGLNCESGVEQNQLKFSINCIGDKVKVR
YILGEISL

Nucleotide


Download         Length: 267 bp        

>NTDB_id=1056517 O1Q79_RS05645 WP_386690744.1 1185203..1185469(-) (comQ) [Lonepinella sp. MS14434]
ATGGGGCTTGTAACCTTATTAGTGGCGTTGAGCCTATTTAGTGGTATTTTTCTTGCTATTAATCAATGGGCGAATATTCA
ACGCAAAACAGCAAGTGAAATTTATCAACGTTATCAAGCGATTCAAATAGCGGAAAATCAACAGCAACGACAATTTTTAG
GATTAAATTGTGAAAGTGGAGTAGAGCAAAATCAACTGAAATTCTCCATTAATTGCATTGGGGATAAGGTAAAAGTGCGG
TATATTTTGGGGGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(49-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

53.488

97.727

0.523

Multiple sequence alignment