Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   O1Q79_RS04530 Genome accession   NZ_CP170386
Coordinates   924433..926820 (-) Length   795 a.a.
NCBI ID   WP_386693181.1    Uniprot ID   -
Organism   Lonepinella sp. MS14434     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 919433..931820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q79_RS04510 (O1Q79_00903) - 920139..920765 (-) 627 WP_386693175.1 YidB family protein -
  O1Q79_RS04515 (O1Q79_00904) kdsB 920865..921638 (-) 774 WP_386693176.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  O1Q79_RS04520 (O1Q79_00905) lpxK 921635..922612 (-) 978 WP_386693178.1 tetraacyldisaccharide 4'-kinase -
  O1Q79_RS04525 (O1Q79_00906) msbA 922623..924371 (-) 1749 WP_386693180.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  O1Q79_RS04530 (O1Q79_00907) rec2 924433..926820 (-) 2388 WP_386693181.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  O1Q79_RS04535 (O1Q79_00908) dksA 927136..927582 (+) 447 WP_386693182.1 RNA polymerase-binding protein DksA -
  O1Q79_RS04540 (O1Q79_00909) pcnB 927628..929118 (+) 1491 WP_386693183.1 polynucleotide adenylyltransferase PcnB -
  O1Q79_RS04545 (O1Q79_00910) folK 929122..929610 (+) 489 WP_386693184.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  O1Q79_RS04550 (O1Q79_00911) - 929892..931820 (+) 1929 WP_386693185.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 90706.35 Da        Isoelectric Point: 9.4622

>NTDB_id=1056514 O1Q79_RS04530 WP_386693181.1 924433..926820(-) (rec2) [Lonepinella sp. MS14434]
MQIILRVINQININTIVYSVILAVISLYFLPTKFLLSWQTCTSLFVIVVILRIVVARKKFVILWLNRALILLVCVGYAHY
FALSALQQSQITPQKVQTMFRIVEIQHQGDYQSLVIETEQPKRRIYTSWKVDQVPKLGEIWQGELQLRPLSSRLNIGGFD
RQTWYFAKDIQAWGTVKSAVKISQDFSWREQRLVDSLAQTQGLIQQGLLLALGFGERAWLHTETWQRYQQTNTAHLIAIS
GLHIGLAMALGFWLVRVIQYFLPTRKITPILPLCGGVILALLYAQLAGFAIPTLRAILAILIVILLRFYRAYCTAWQLYV
RVVALLLLCDPLMILSTSFWLSIGAVACLILWYQLFPLHLMRWRGLPLSPKVRWIFALFHLQLGLFCLFTPIQLAFFHGF
SLQGFVANLLIVPLYSFLLVPIVLLAVFSHGGFYSWQIANFLADKITDLLSLFQNSWLNLSYLQSLYLNILLAFILWVAL
YKIYGPTQNIANYQRRPLCFSLKSDRNLSPILYNRMQQGLILFILACTTLLCGHYFYRSDWQVETLDVGQGLATLIVKNQ
HGILYDTGASWQGGSMAELEIIPYLQRQGIKLDYVIVSHDDNDHAGGANAIIKMFPDAVFISPSYKNYGENHRDFCKKDE
QWEWQGIKISALSPDTLVQRAENRDSCILLMRQATHTVLLTGDADIATEQRILSTLSKVEVLQVGHHGSKTSAGINFVNK
IKPDIALISSGRWNPWHFPNQGVMERLHQAKSAVYNTAVSGQISVRFYADNTAIVTARNELSPWYQQIIDVQARD

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=1056514 O1Q79_RS04530 WP_386693181.1 924433..926820(-) (rec2) [Lonepinella sp. MS14434]
ATGCAGATAATTTTAAGAGTAATCAATCAAATAAATATAAACACTATTGTATATAGCGTTATTTTAGCGGTTATTTCATT
ATATTTTTTACCCACGAAATTTTTATTATCTTGGCAAACTTGTACGAGTTTATTTGTTATTGTTGTTATATTGCGAATTG
TTGTAGCTAGAAAAAAATTCGTTATATTATGGCTAAATAGAGCGTTAATTTTGCTAGTATGTGTTGGTTACGCACATTAC
TTTGCATTGAGTGCCTTGCAACAATCCCAAATCACACCTCAAAAAGTTCAAACGATGTTTCGTATCGTGGAAATTCAACA
TCAAGGGGATTATCAATCTTTGGTGATAGAAACAGAACAACCTAAAAGGCGGATTTATACCAGTTGGAAAGTGGATCAAG
TCCCTAAACTAGGTGAAATTTGGCAAGGTGAATTACAACTTCGACCGCTTTCATCTCGTTTAAATATAGGTGGATTCGAT
CGACAAACATGGTATTTTGCCAAAGATATTCAGGCATGGGGAACGGTAAAAAGTGCGGTCAAAATTTCGCAAGATTTTTC
GTGGCGAGAACAACGTTTAGTAGATAGTTTGGCCCAAACCCAAGGATTAATCCAACAAGGGCTTTTACTCGCGCTTGGTT
TTGGAGAGCGAGCATGGTTACATACAGAGACTTGGCAACGCTATCAACAAACTAACACGGCTCATTTAATTGCAATTTCT
GGACTGCATATCGGCTTGGCGATGGCACTCGGTTTTTGGTTAGTTCGAGTGATACAGTATTTTTTACCTACCCGAAAAAT
AACCCCTATTCTGCCTTTATGTGGCGGGGTAATACTCGCTTTATTATATGCACAATTAGCGGGTTTTGCGATTCCTACCT
TGCGAGCCATTCTAGCGATATTAATAGTGATATTATTGCGTTTTTATCGAGCCTATTGTACTGCATGGCAACTCTATGTT
CGGGTAGTGGCATTGTTGTTGCTATGTGATCCTTTAATGATTTTATCCACGAGTTTTTGGTTATCCATTGGGGCAGTAGC
TTGCTTAATTTTATGGTATCAGCTTTTCCCATTGCATTTAATGAGGTGGCGTGGTTTACCTCTCTCGCCAAAAGTGCGGT
GGATTTTTGCATTATTTCACTTACAGTTAGGCTTATTTTGTTTATTTACTCCGATTCAACTGGCTTTTTTCCATGGGTTT
TCGTTACAAGGCTTTGTCGCAAATTTATTAATAGTACCTCTATATAGCTTTTTACTGGTGCCTATTGTGTTATTGGCGGT
ATTTAGTCATGGCGGTTTTTATAGTTGGCAAATAGCAAATTTTTTAGCCGATAAAATTACCGATTTACTTTCGCTTTTTC
AAAATAGTTGGCTTAATTTGTCTTATCTGCAAAGTTTGTATTTAAATATTTTATTAGCGTTTATATTATGGGTAGCATTA
TATAAAATTTATGGTCCAACTCAGAACATTGCCAATTATCAGCGAAGACCGCTTTGCTTTTCCTTAAAATCAGATCGTAA
TTTATCCCCCATTCTTTATAATCGTATGCAACAAGGCTTGATCCTGTTTATTTTAGCTTGTACTACATTACTTTGCGGAC
ATTATTTTTATCGTTCAGATTGGCAAGTAGAAACCCTTGATGTGGGACAAGGATTAGCGACATTAATTGTGAAAAATCAA
CATGGAATTTTGTACGATACTGGGGCAAGTTGGCAAGGTGGATCGATGGCAGAACTTGAAATTATACCTTATTTGCAACG
ACAAGGAATTAAGTTAGATTATGTCATTGTCAGCCATGATGATAATGATCATGCTGGTGGGGCAAATGCAATAATAAAGA
TGTTTCCAGATGCTGTGTTTATCAGTCCATCCTATAAAAACTATGGCGAAAACCACCGCGATTTTTGTAAGAAAGATGAA
CAATGGGAATGGCAAGGGATAAAGATAAGTGCATTATCCCCAGATACGCTTGTACAACGAGCAGAGAACCGAGATTCTTG
TATATTATTAATGCGACAAGCCACGCATACTGTCTTACTAACGGGAGATGCAGATATTGCTACAGAACAACGGATTCTAT
CAACATTATCTAAAGTAGAGGTGTTACAAGTTGGGCATCATGGGAGTAAAACATCCGCAGGAATAAATTTTGTAAATAAA
ATTAAGCCTGATATAGCGTTGATTTCTAGTGGTCGTTGGAATCCTTGGCATTTCCCTAATCAAGGCGTGATGGAACGTTT
ACATCAAGCTAAAAGTGCGGTGTATAATACCGCAGTTTCGGGGCAAATTTCTGTGCGATTTTATGCGGATAACACTGCGA
TAGTGACCGCTAGAAATGAGTTGAGTCCTTGGTATCAACAGATTATTGATGTTCAAGCGCGTGATTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(212-480)

Domain of unknown function (DUF4131) (DUF4131)

(38-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(547-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

53.015

100

0.531

Multiple sequence alignment