Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | R8569_RS05205 | Genome accession | NZ_AP028413 |
| Coordinates | 1021534..1021836 (+) | Length | 100 a.a. |
| NCBI ID | WP_002877750.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain IDH-12448 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1016534..1026836
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8569_RS05180 (I12448_10090) | rpsR | 1016896..1017156 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| R8569_RS05185 (I12448_10100) | lon | 1017217..1019592 (-) | 2376 | WP_002868636.1 | endopeptidase La | - |
| R8569_RS05190 (I12448_10110) | bamD | 1019609..1020256 (-) | 648 | WP_002877748.1 | outer membrane protein assembly factor BamD | - |
| R8569_RS05195 (I12448_10120) | fliW | 1020417..1020806 (+) | 390 | WP_002877749.1 | flagellar assembly protein FliW | - |
| R8569_RS05200 (I12448_10130) | proC | 1020806..1021537 (+) | 732 | WP_002855729.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| R8569_RS05205 (I12448_10140) | ctsT | 1021534..1021836 (+) | 303 | WP_002877750.1 | hypothetical protein | Machinery gene |
| R8569_RS05210 (I12448_10150) | - | 1021833..1022495 (+) | 663 | WP_002877751.1 | hypothetical protein | - |
| R8569_RS05215 (I12448_10160) | - | 1022492..1022944 (+) | 453 | WP_002877757.1 | hypothetical protein | - |
| R8569_RS05220 (I12448_10170) | hemD | 1022941..1023570 (-) | 630 | WP_002877758.1 | uroporphyrinogen-III synthase | - |
| R8569_RS05225 (I12448_10180) | thiE | 1023548..1024180 (-) | 633 | WP_002877759.1 | thiamine phosphate synthase | - |
| R8569_RS05230 (I12448_10190) | thiD | 1024170..1024982 (-) | 813 | WP_002877760.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| R8569_RS05235 (I12448_10200) | - | 1024979..1025665 (-) | 687 | WP_002866108.1 | endonuclease III domain-containing protein | - |
| R8569_RS05240 (I12448_10210) | - | 1025662..1026423 (-) | 762 | WP_002856328.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12138.20 Da Isoelectric Point: 7.0039
>NTDB_id=105651 R8569_RS05205 WP_002877750.1 1021534..1021836(+) (ctsT) [Campylobacter jejuni strain IDH-12448]
MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=105651 R8569_RS05205 WP_002877750.1 1021534..1021836(+) (ctsT) [Campylobacter jejuni strain IDH-12448]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATCA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTATTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGTGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATCA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTATTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGTGTTTATTTTAAAGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
98 |
100 |
0.98 |