Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   O1Q81_RS05930 Genome accession   NZ_CP170385
Coordinates   1242804..1243757 (+) Length   317 a.a.
NCBI ID   WP_386696509.1    Uniprot ID   -
Organism   Lonepinella sp. MS14436     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1237804..1248757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q81_RS05905 (O1Q81_01176) - 1238165..1238995 (+) 831 WP_386685896.1 SirB1 family protein -
  O1Q81_RS05910 (O1Q81_01177) kdsA 1239008..1239862 (+) 855 WP_386696505.1 3-deoxy-8-phosphooctulonate synthase -
  O1Q81_RS05915 (O1Q81_01178) sfsA 1240074..1240790 (-) 717 WP_386696506.1 DNA/RNA nuclease SfsA -
  O1Q81_RS05920 (O1Q81_01179) - 1240877..1241146 (+) 270 WP_386685902.1 YcgL domain-containing protein -
  O1Q81_RS05925 (O1Q81_01180) mepM 1241218..1242669 (+) 1452 WP_386696507.1 murein DD-endopeptidase MepM -
  O1Q81_RS05930 (O1Q81_01181) ceuB 1242804..1243757 (+) 954 WP_386696509.1 ABC transporter permease Machinery gene
  O1Q81_RS05935 (O1Q81_01182) - 1243768..1244724 (+) 957 WP_386693762.1 iron chelate uptake ABC transporter family permease subunit -
  O1Q81_RS05940 (O1Q81_01183) - 1244731..1245492 (+) 762 WP_386696510.1 ABC transporter ATP-binding protein -
  O1Q81_RS05945 (O1Q81_01184) - 1245528..1246439 (+) 912 WP_386696512.1 siderophore ABC transporter substrate-binding protein -
  O1Q81_RS05950 (O1Q81_01185) ompA 1246809..1247867 (+) 1059 WP_386696514.1 porin OmpA -
  O1Q81_RS05955 (O1Q81_01186) - 1247954..1248535 (+) 582 WP_386696516.1 LemA family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34627.72 Da        Isoelectric Point: 9.6038

>NTDB_id=1056495 O1Q81_RS05930 WP_386696509.1 1242804..1243757(+) (ceuB) [Lonepinella sp. MS14436]
MIKRRYLFLLVILLSVLSLFIGVSTVNLAGLLAFDGEQWEIFLISRVPRLVSILIAGAALSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILIAILLFPSASMLVKTSIAIAVSFLGTLLFMTILSRLKFKDSIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLAGWLQGDFSLVMAGRYEILYFSLPALIIAYLFANRFSIVGMGEEFATNLGLNYQQVLYVGLAIVATVSSIIIVSVG
VIPFLGLIVPNLVTLYLGDNLKKILSHTALLGAVFVLFCDILGRIVIYPYEISINAVVGVFGSAMFLILLFKRYQQG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1056495 O1Q81_RS05930 WP_386696509.1 1242804..1243757(+) (ceuB) [Lonepinella sp. MS14436]
TTGATTAAACGCCGTTACTTATTTTTACTGGTTATTTTGCTTTCTGTATTATCGCTTTTTATCGGCGTTAGTACGGTCAA
TCTTGCTGGTTTATTAGCCTTTGACGGTGAGCAGTGGGAAATTTTTTTGATTAGTCGTGTGCCACGTTTAGTCAGTATTT
TAATTGCTGGAGCCGCTTTAAGTATTTGTGGCTTAGTCATGCAGCAATTAAGTCGTAACCGTTTTGTTTCACCCACTACT
GCTGGCACAATGGACAGTGCAAGATTAGGTATTTTAATTGCTATTTTACTGTTTCCGTCTGCCTCAATGCTAGTTAAAAC
CAGTATTGCCATTGCCGTATCTTTCTTAGGGACGTTGTTATTTATGACGATTTTATCCCGTCTAAAATTTAAAGATAGCA
TTTTTGTTCCCTTAGTGGGGATTATGTTTGGTAATATTATCAGTTCAATTACCGCTTTTATTGCCTATAAAGAAGATCTT
TTGCAAAACTTGGCAGGTTGGTTACAAGGGGACTTTTCTTTAGTGATGGCAGGGCGTTATGAAATCCTTTATTTTAGTTT
ACCTGCGTTAATTATAGCTTATTTGTTTGCTAACCGTTTTTCCATTGTAGGAATGGGTGAAGAATTTGCCACAAATCTCG
GGTTAAATTATCAACAGGTTCTGTATGTAGGATTAGCCATTGTGGCGACTGTTTCTTCAATTATTATTGTATCGGTCGGC
GTGATCCCCTTTTTAGGTTTAATCGTACCGAATTTAGTTACTCTTTATTTAGGCGATAATCTGAAAAAAATTCTGTCACA
TACCGCCTTGCTTGGTGCGGTATTTGTACTGTTCTGTGATATTTTAGGGCGTATTGTGATTTATCCTTATGAAATTTCGA
TTAATGCTGTAGTAGGTGTATTTGGCAGTGCGATGTTCTTAATTTTATTATTTAAACGTTATCAACAGGGTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.751

97.476

0.514

Multiple sequence alignment