Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACLV7W_RS00175 Genome accession   NZ_OZ217346
Coordinates   32447..33217 (+) Length   256 a.a.
NCBI ID   WP_411865219.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27447..38217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS00155 - 28041..29392 (+) 1352 WP_411865217.1 IS3 family transposase -
  ACLV7W_RS00160 (SMID22_00300) - 29503..29940 (+) 438 WP_001863803.1 CoA-binding protein -
  ACLV7W_RS00165 (SMID22_00310) - 30122..31132 (-) 1011 WP_411865218.1 YeiH family protein -
  ACLV7W_RS00170 (SMID22_00320) - 31281..32450 (+) 1170 WP_125455081.1 pyridoxal phosphate-dependent aminotransferase -
  ACLV7W_RS00175 (SMID22_00330) recO 32447..33217 (+) 771 WP_411865219.1 DNA repair protein RecO Machinery gene
  ACLV7W_RS00180 (SMID22_00340) plsX 33214..34206 (+) 993 WP_411865220.1 phosphate acyltransferase PlsX -
  ACLV7W_RS00185 (SMID22_00350) - 34212..34448 (+) 237 WP_000136444.1 acyl carrier protein -
  ACLV7W_RS00190 (SMID22_00360) - 34893..35069 (+) 177 WP_125453304.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  ACLV7W_RS00195 (SMID22_00370) - 35301..35471 (+) 171 WP_007522555.1 H354_08695 family bacteriocin-like peptide -
  ACLV7W_RS00200 (SMID22_00380) - 35511..35690 (+) 180 WP_125453302.1 hypothetical protein -
  ACLV7W_RS00205 (SMID22_00390) - 36069..36257 (+) 189 WP_000757184.1 hypothetical protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29846.33 Da        Isoelectric Point: 5.1672

>NTDB_id=1056296 ACLV7W_RS00175 WP_411865219.1 32447..33217(+) (recO) [Streptococcus mitis isolate S. mitis D22]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQSGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPDHYHEDERRCHLNPNIPYLLNQFQAIDFEILETISLKPEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1056296 ACLV7W_RS00175 WP_411865219.1 32447..33217(+) (recO) [Streptococcus mitis isolate S. mitis D22]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGCAATTTTCGTGAGGATGATAAGCTAGTCAAGATTTT
TACAGAGCAGTCTGGCAAACGGATGTTTTTCGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCGGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGATGGGCTCAGTTACATTGAGGACTATCATGAGGTGATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCTTATGCGACCTATGTAGCGGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCTGGCTTGGATTATCAAGTCTTGACCA
ATATTTTTGAAATCCAAATCTTGACCCGATTTGGTATTAGTCTCAATTTTAATGAGTGTGTCTTTTGTCATCGGGTCGGT
CAGGCTTTTGATTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGATCATTATCATGAAGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAGATTTTGGAGACCATTTCGCTCAAGCCTG
AAATCAAGCAAGAACTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.047

100

0.98