Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   ACLV7D_RS05320 Genome accession   NZ_OZ217345
Coordinates   1121365..1124631 (-) Length   1088 a.a.
NCBI ID   WP_218764750.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1116365..1129631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS05310 (SMIF22_10380) - 1116522..1117700 (-) 1179 WP_173283196.1 hypothetical protein -
  ACLV7D_RS05315 (SMIF22_10390) rexA 1117718..1121368 (-) 3651 WP_164226180.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACLV7D_RS05320 (SMIF22_10400) rexB 1121365..1124631 (-) 3267 WP_218764750.1 ATP-dependent nuclease subunit B Machinery gene
  ACLV7D_RS05325 (SMIF22_10410) - 1124832..1125719 (-) 888 WP_050253051.1 diacylglycerol/lipid kinase family protein -
  ACLV7D_RS05330 (SMIF22_10420) - 1126515..1127780 (-) 1266 WP_164226178.1 hypothetical protein -
  ACLV7D_RS05335 - 1128129..1128476 (+) 348 Protein_1002 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124314.24 Da        Isoelectric Point: 6.0172

>NTDB_id=1056239 ACLV7D_RS05320 WP_218764750.1 1121365..1124631(-) (rexB) [Streptococcus mitis isolate S. mitis F22]
MKLLYTDIRTSLTKILTREAEELVVAGKRVFYIAPNSLSFEKERAVLECLSQYASFEITVTRFAQMARYLVLNDLPAKTS
LDDIGLGMAFYKCLAELDPKNLRVYGAIKQDPQFIQQLIELYHEMTKAQMNFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSQLIAAIENDKVSSDFTQIALVIDGFTRFSAEEERIVDLLHGKGVEIVIGAYASKKAYTSPFSEGNLYQAS
VEFLHHLASKYQIPAQDRSQTHEKMDSFDKASRLLESSYDFSELTLEVNDEDCENLQIWSCLTQKEELELVARSIRQKLH
ENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTGLYTDL
SQADIDAFEQYIRYLGINGLPAFQQTFTKSHHGKFSLERLNALRLRILTPLETLFASRKQKTENLLQKWNVFLKEGAVTK
QLQDLTATMKALEQERQTEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKIAQNTSLLTDEERQNLNQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESE
SKESAYLQELVHFGFSRKEKRMNHKGLSKEDIGSYHSLLSSLVAYHQQGDASDTEQDLTFIKVLARVMGKKLDQQGLENP
ALPSSKQLTKDTLQALYPTNQEFYLSTSGLTEFYRNQYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFECALQLPNKDS
FDKRLEQAIQETSKEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKEQAFIQLDNGRSVFVR
GKVDRIDRLKADGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLAGAI
VEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILSGQFAINPYTENGRSIAPYVQQH
QAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWFEKIREELNR

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=1056239 ACLV7D_RS05320 WP_218764750.1 1121365..1124631(-) (rexB) [Streptococcus mitis isolate S. mitis F22]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACTAAAATTCTAACCAGAGAGGCGGAGGAGCTAGTTGTTGCGGG
CAAGCGGGTCTTCTACATCGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGTATG
CTTCTTTTGAGATTACTGTTACGCGCTTTGCTCAAATGGCTCGTTACCTAGTCTTGAATGACTTACCTGCTAAGACCAGT
CTAGATGACATTGGTCTTGGGATGGCCTTTTACAAATGTCTTGCCGAACTTGATCCCAAAAACTTACGAGTATACGGTGC
CATCAAGCAGGATCCTCAATTTATCCAGCAGTTGATCGAGCTTTACCACGAGATGACCAAAGCTCAGATGAATTTTTTGG
ACTTGGAGAGTTTGACGGATGAGGACAAGCGAGCAGACTTACTCTTGATTTTTGAGAAGGTAACGGCTTATCTCAATCAG
GGGCAGTTGGCTCAGGGAAGTCAATTGTCTCAATTGATTGCGGCTATTGAGAATGACAAGGTAAGTAGTGATTTTACTCA
AATCGCCTTGGTTATTGATGGATTTACCCGTTTTTCTGCTGAGGAAGAGCGAATTGTGGACCTACTTCATGGCAAGGGTG
TTGAGATTGTTATCGGGGCTTATGCTAGTAAGAAAGCTTATACCAGTCCCTTTAGCGAGGGCAATCTCTATCAAGCCAGT
GTGGAGTTTCTCCATCATCTAGCCTCTAAATACCAAATTCCTGCTCAAGACCGTTCTCAGACTCATGAGAAGATGGATAG
TTTTGATAAGGCCTCTCGTTTATTGGAATCGTCCTATGACTTTTCAGAATTAACATTGGAGGTGAATGATGAAGACTGTG
AAAACTTACAAATCTGGTCTTGTTTGACACAAAAGGAGGAGTTGGAGCTAGTAGCCCGCAGCATTCGCCAGAAATTACAT
GAGAACTCAGACCTGAGCTACAAGCATTTTCGTATTCTCTTGGGGGATGTGGCCTCTTATCAGTTATCTCTCAAAACCAT
TTTTGACCAGTATCAGATTCCTTTCTATCTTGGTAGAAGCGAATCCATGGCGCACCACCCTTTAACTCAGTTTGTCGAGT
CTATTTTAGCTTTAAAACGCTATCGTTTCCGTCAAGAGGATTTGATAAACCTTCTTAGAACAGGTCTATATACCGACCTT
AGTCAGGCTGATATTGATGCTTTTGAGCAATATATTCGCTATCTTGGTATCAATGGCTTACCAGCCTTTCAGCAAACCTT
TACCAAGTCCCACCATGGGAAATTTAGTCTTGAGCGTTTGAATGCTCTTCGTCTGCGTATTTTAACCCCTCTTGAAACCC
TCTTTGCCAGTCGAAAACAAAAGACTGAAAATCTCCTACAAAAATGGAATGTCTTTCTAAAAGAGGGAGCGGTGACCAAG
CAGTTGCAAGATTTAACAGCTACCATGAAAGCCCTAGAGCAGGAAAGACAGACTGAAGTTTGGAAGGCATTCTGCCATGT
TTTAGAACAATTTGCGACCGTTTTTGCTGGTTCACAGGTTAGTCTGGAAGACTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCTCAGTATCGCACTATTCCAGCAACAGTGGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCACCATTGACT
GCTGACTTTGTCTACGCCATAGGGCTGACTCAGGACAATTTACCAAAAATTGCGCAAAATACTAGCCTTTTGACAGATGA
AGAAAGGCAAAACCTAAATCAAGCGACCGAAGAAGGCGTTCAATTGCTGATTGCTAGTAGTGAAAATCTCAAGAAAAATC
GCTATACTATGCTTTCCTTGGTCAATTCTGCTCGTAAGCAGTTGGTCTTGTCGGCTCCAAGCCTTTTTAACGAAAGTGAA
AGTAAGGAATCTGCCTATCTTCAAGAGTTGGTCCATTTTGGATTTAGTCGGAAAGAGAAGAGGATGAATCACAAAGGGCT
GTCTAAGGAAGATATTGGGTCCTATCATAGTCTTTTGTCTAGTCTAGTTGCCTATCACCAGCAGGGAGATGCGAGCGATA
CTGAGCAAGATTTGACATTTATTAAAGTTCTGGCGCGTGTCATGGGTAAAAAGTTAGACCAGCAAGGTCTAGAAAATCCT
GCCCTTCCAAGCAGTAAGCAGTTGACTAAGGATACCTTACAAGCTCTCTATCCTACTAATCAGGAGTTTTACCTGTCTAC
CTCTGGTTTGACGGAGTTTTACCGGAACCAATACAGTTATTTCCTCCGCTACGTTTTAGGCTTGCAAGAGGAATTACGTC
TACGTCCTGATGCCCGTAGTCACGGAAATTTCTTGCACCGCATTTTTGAATGTGCCTTGCAGTTGCCTAACAAAGATTCC
TTTGACAAACGTCTAGAACAAGCTATTCAAGAAACCAGTAAAGAACGCGAATTTGAAGCAATTTATCAGGAAAGTTTGGA
AGCCCAGTTTACCAAGGAAGTTCTGCTTGATGTGGCACGGACAACTGGACATATTCTCCGACACAATCCAGCCATCGAAA
CCATCAAAGAGGAAGCGAATTTCGGTGGGAAAGAGCAAGCCTTTATTCAATTGGACAATGGACGCAGTGTCTTTGTACGA
GGCAAGGTTGACCGCATTGACCGTTTGAAAGCTGATGGGGCGATAGGAGTAGTAGACTACAAGTCTAGTCTAACTCAGTT
CCAGTTTCCTCATTTCTTTAATGGCCTCAATTCCCAGTTGCCAACCTATCTAGCTGCCTTAAAAAGAGAAGGGGAGCAGA
ACTTTTTCGGCGCTATGTACTTGGAAATGGCTGAACCTGTTCAATCTCTGATGGCCGTTAAAAGTCTGGCAGGTGCAATA
GTAGAAGCCAGCAAGTCTATGAAATACCAAGGCCTCTTTTTAGAAAAAGAAAGCAGTCATTTGGGTGAATTCTACAATAA
AAACAAGGCTAATCAGCTGACGGATGAGGAATTCCAGCTCCTACTAGACTACAATGCCCATCTATACAAGAAAGCAGCAG
AGAAGATTTTATCAGGCCAGTTCGCTATCAATCCTTATACCGAAAATGGTAGAAGCATTGCCCCCTACGTTCAGCAGCAT
CAGGCTATTACTGGCTTTGAAGCTAATTACCACTTAGGTCAAGCCCGTTTCCTAGAAAAGTTGGACTTGGCTGACGGCAA
GCGCCTGGTCGGAGAGAAACTCAAGCAAGCTTGGTTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(745-1027)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

93.309

100

0.936