Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8609_RS03290 Genome accession   NZ_AP028412
Coordinates   634119..634556 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain IDH-12128     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629119..639556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8609_RS03265 (I12128_06530) - 629648..630763 (+) 1116 WP_224326895.1 sensor histidine kinase KdpD -
  R8609_RS03270 (I12128_06540) - 630787..631431 (+) 645 WP_079261384.1 DUF4118 domain-containing protein -
  R8609_RS03275 (I12128_06550) uvrB 631533..633506 (-) 1974 WP_032584670.1 excinuclease ABC subunit UvrB -
  R8609_RS03280 (I12128_06560) - 633660..633890 (+) 231 WP_002852327.1 hypothetical protein -
  R8609_RS03285 (I12128_06570) - 633880..634122 (+) 243 WP_002854947.1 hypothetical protein -
  R8609_RS03290 (I12128_06580) Cj0683 634119..634556 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8609_RS03295 (I12128_06590) priA 634538..636391 (+) 1854 WP_074484734.1 primosomal protein N' -
  R8609_RS03300 (I12128_06600) cipA 636401..637795 (-) 1395 WP_002860010.1 DUF2972 domain-containing protein -
  R8609_RS03305 (I12128_06610) ispG 637941..639014 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=105621 R8609_RS03290 WP_002852324.1 634119..634556(+) (Cj0683) [Campylobacter jejuni strain IDH-12128]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=105621 R8609_RS03290 WP_002852324.1 634119..634556(+) (Cj0683) [Campylobacter jejuni strain IDH-12128]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment