Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACLV7D_RS00215 Genome accession   NZ_OZ217345
Coordinates   40897..41667 (+) Length   256 a.a.
NCBI ID   WP_000616132.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35897..46667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS00195 (SMIF22_00350) - 37431..37868 (+) 438 WP_218764144.1 CoA-binding protein -
  ACLV7D_RS00200 (SMIF22_00360) - 38051..39061 (-) 1011 WP_173253454.1 YeiH family protein -
  ACLV7D_RS00205 - 39272..39535 (-) 264 WP_225904777.1 hypothetical protein -
  ACLV7D_RS00210 (SMIF22_00370) - 39731..40900 (+) 1170 WP_173253455.1 pyridoxal phosphate-dependent aminotransferase -
  ACLV7D_RS00215 (SMIF22_00380) recO 40897..41667 (+) 771 WP_000616132.1 DNA repair protein RecO Machinery gene
  ACLV7D_RS00220 (SMIF22_00390) plsX 41664..42656 (+) 993 WP_218764145.1 phosphate acyltransferase PlsX -
  ACLV7D_RS00225 (SMIF22_00400) - 42662..42895 (+) 234 WP_000136446.1 acyl carrier protein -
  ACLV7D_RS00230 (SMIF22_00410) - 43179..44033 (+) 855 WP_061439962.1 C40 family peptidase -
  ACLV7D_RS00235 (SMIF22_00420) - 44146..45315 (+) 1170 WP_218764147.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACLV7D_RS00240 (SMIF22_00430) - 45468..45614 (+) 147 WP_000425304.1 smi_0057.1 family bacteriocin-like peptide -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29848.26 Da        Isoelectric Point: 5.0164

>NTDB_id=1056178 ACLV7D_RS00215 WP_000616132.1 40897..41667(+) (recO) [Streptococcus mitis isolate S. mitis F22]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLNPEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLSDWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1056178 ACLV7D_RS00215 WP_000616132.1 40897..41667(+) (recO) [Streptococcus mitis isolate S. mitis F22]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGCAATTTTCGTGAGGATGATAAGCTAGTCAAGATTTT
TACAGAGCAGGCTGGTAAGCGCATGTTTTTCGTTAAACATGCTGGCCAGTCTAAGCTGGCCCCTGTTATTCAGCCCTTGG
TGCTGGCTCGATTTCTCTTGAGAATCAATGATGATGGGCTCAGTTACATTGAGGACTATCATGAGGTGATGACCTTTCCC
AAGATCAATAGCGATCTTTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCCGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTACAAAAGACTTTGGAATTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACTA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGGATCAGCCTCAATTTTAATGAGTGTGTCTTTTGCCATCGGATCGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAAGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCTTATTTGCTCAATCAATTTCAAGCCATTGATTTTGAAACCTTGGAGACCATTTCGCTCAATCCCG
AAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTATCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

97.656

100

0.977