Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACLV7Z_RS08115 Genome accession   NZ_OZ217343
Coordinates   1593965..1596187 (-) Length   740 a.a.
NCBI ID   WP_218773753.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1588965..1601187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS08100 (SMIG22_15930) - 1589950..1591170 (-) 1221 WP_218773751.1 aminoacyltransferase -
  ACLV7Z_RS08105 (SMIG22_15940) - 1591282..1592061 (-) 780 WP_218773752.1 alpha/beta hydrolase -
  ACLV7Z_RS08110 (SMIG22_15950) - 1592130..1593791 (-) 1662 WP_000065626.1 ribonuclease J -
  ACLV7Z_RS08115 (SMIG22_15960) recJ 1593965..1596187 (-) 2223 WP_218773753.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACLV7Z_RS08120 (SMIG22_15970) - 1596364..1597122 (+) 759 WP_218773754.1 amino acid ABC transporter ATP-binding protein -
  ACLV7Z_RS08125 (SMIG22_15980) - 1597133..1597927 (+) 795 WP_218773755.1 transporter substrate-binding domain-containing protein -
  ACLV7Z_RS08130 (SMIG22_15990) - 1597940..1598617 (+) 678 WP_218773756.1 amino acid ABC transporter permease -
  ACLV7Z_RS08135 (SMIG22_16000) - 1598627..1599286 (+) 660 WP_218773757.1 amino acid ABC transporter permease -
  ACLV7Z_RS08140 (SMIG22_16010) - 1599429..1600619 (+) 1191 WP_218773758.1 ferric reductase-like transmembrane domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82558.17 Da        Isoelectric Point: 4.3818

>NTDB_id=1056017 ACLV7Z_RS08115 WP_218773753.1 1593965..1596187(-) (recJ) [Streptococcus mitis isolate S. mitis G22]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKP
VFYIKDFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGVPVLDFAGELPSLVNSEAVVVKTIPEDITQLKTIFQKQNFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLAVYLNIQQILLVKMIQVFKELGFVTIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
QEMMALGTVQEIYDFLMEKE

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1056017 ACLV7Z_RS08115 WP_218773753.1 1593965..1596187(-) (recJ) [Streptococcus mitis isolate S. mitis G22]
TTGATAACACCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCAGATTTTACAAAGATAGCCAAGAAGGCTGG
ATTGGGTCCTGAGGTGGCTCGGTTATTATTTGAAAGAGGAATTCAGGACCAAGAAAGTCTGAAGAAGTTTTTAGAACCTT
CCTTGGAGGACTTGCACGACCCTTATCTGCTCCATGATATGGACAAGGCAGTGGAACGGATTCGTCAGGCCATTGAAGAA
GGGGAAAATATTCTCGTTTATGGAGACTACGATGCGGATGGCATGACTTCGGCTTCGATTGTGAAGGAAAGTTTGGAACA
GCTTGGCGCTGAGTGCCGTGTTTACTTGCCCAATCGTTTTACCGATGGCTATGGCCCTAATGCTAGTGTCTATAAATATT
TTATCGAGCAAGAAGGAATTTCCTTGATTGTGACAGTGGATAATGGAGTTGCTGGTCACGAAGCCATTGAGCTGGCTCAG
TCTATGGGAGTAGATGTCATTGTGACAGACCACCATTCCATGCCTGAAACCCTGCCTGATGCCTATGCCATTGTCCATCC
TGAACATCCAGATGCGGACTATCCCTTCAAATATCTGGCTGGTTGTGGAGTTGCTTTCAAGCTGGCTTGTGCCCTTTTAG
AAGAAGTACAAGTGGAATTGCTTGATTTGGTCGCTATTGGTACCATTGCTGATATGGTTAGTTTGACAGATGAGAACCGT
ATCTTGGTTCAGTATGGTCTGGAAATGTTGGGACACACTCAGCGTATTGGTCTACAAGAAATGCTAGACATGGCTGGGAT
TGCTGCCAACGAAGTAACAGAAGAAACGGTTGGTTTCCAGATTGCCCCTCGTTTGAATGCCTTGGGCCGCTTGGATGATC
CCAATCCTGCCATCGATTTGCTGACTGGATTTGACGACGAGGAGGCGCATGAGATTGCCCTTATGATTCATCAGAAAAAC
GAAGAGCGCAAGGAAATCGTCCAGTCTATCTATGAAGAAGCTAAGACCATGGTGGACCCTGAGAAGAAGGTCCAAGTCTT
GGCTAAGGAAGGCTGGAATCCTGGGGTTCTGGGTATCGTGGCTGGTCGTTTGCTGGAAGAACTAGGGCAGACAGTCATCG
TTCTTAATATAGAAGACGGTCGTGCCAAGGGTAGTGCTCGTAGCGTGGAGGCGGTCGATATTTTTGAAGCCCTAGATCCC
CATCGAGACCTCTTCATCGCCTTTGGCGGTCATGCTGGTGCGGCTGGCATGACGCTGGAAGTTGAGAAACTCTCAGATTT
ATCTCAGGTCTTGGAAGACTATGTCCGTGAAAAAGGTGCAGATGCTGGTGGCAAGAACAAGTTAAATCTAGATGAAGAAC
TGGATTTGGAGGCACTTAGCTTGGAAACGGTCAAAAGTTTTGAACGTTTGGCACCTTTTGGAATGGACAATCAGAAACCT
GTCTTTTATATCAAGGATTTTCAGGTCGAAAGTGCCCGTACCATGGGGGCAGGCAATGCCCATCTCAAGCTGAAAATATC
TAAGGGTGAAGCTAGTTTTGAAGTAGTAGCCTTTGGACAAGGTAGATGGGCAACAGAATTTTCTCAAACCAAGAATCTAG
AGCTGGCAGTCAAATTGTCTGTCAACCAATGGAATGGTCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAG
GGTGTTCAACTCTTTAACATCCGTGGGAAAAATGCAGTCTTGCCAGAAGGGGTTCCAGTCTTGGATTTTGCTGGAGAATT
ACCGAGTCTAGTAAATAGTGAAGCTGTTGTCGTAAAAACCATTCCAGAGGATATTACTCAGCTGAAGACCATTTTTCAGA
AACAGAATTTTTCCGCTGTCTATTTCAAAAATGATATTGACAAGGCCTACTATCTGACAGGCTATGGGACTAGAGAGCAG
TTTGCCAAATTGTACAAGACTATCTACCAGTTTCCAGAGTTTGATATTCGCTACAAGCTCAAGGATTTGGCTGTTTATCT
CAATATCCAACAAATCTTGCTGGTTAAGATGATTCAAGTCTTTAAAGAACTAGGCTTTGTGACGATCAAAGATGGGGTTA
TGACAGTCAATAAAGAAGCGCCAAAGAGAGAAATCGGAGAAAGTCAGATTTACCAAAATCTCAAACAAACCGTCAAAGAC
CAAGAAATGATGGCGCTGGGTACCGTGCAAGAAATTTATGACTTTTTAATGGAAAAAGAGTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

97.838

100

0.978
  recJ Bacillus subtilis subsp. subtilis str. 168

36.788

100

0.384