Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | R8953_RS03285 | Genome accession | NZ_AP028409 |
| Coordinates | 656840..657790 (-) | Length | 316 a.a. |
| NCBI ID | WP_031263832.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain IDH-11999 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 651840..662790
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8953_RS03250 (I11999_06440) | - | 652035..652235 (+) | 201 | WP_002777240.1 | cbb3-type cytochrome oxidase assembly protein | - |
| R8953_RS03255 (I11999_06450) | - | 652265..652564 (-) | 300 | WP_002777238.1 | cytochrome c | - |
| R8953_RS03260 (I11999_06460) | - | 652641..653201 (+) | 561 | WP_057980451.1 | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | - |
| R8953_RS03265 (I11999_06470) | rfaD | 653202..654155 (+) | 954 | WP_023890814.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| R8953_RS03270 (I11999_06480) | rfaE1 | 654148..655533 (+) | 1386 | WP_002872241.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| R8953_RS03275 (I11999_06490) | gmhA | 655530..656090 (+) | 561 | WP_023890815.1 | D-sedoheptulose 7-phosphate isomerase | - |
| R8953_RS03280 (I11999_06500) | - | 656090..656854 (+) | 765 | Protein_642 | glycosyltransferase family 25 protein | - |
| R8953_RS03285 (I11999_06510) | waaF | 656840..657790 (-) | 951 | WP_031263832.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| R8953_RS03290 (I11999_06520) | - | 657849..658685 (+) | 837 | WP_031263834.1 | glycosyltransferase family 2 protein | - |
| R8953_RS03295 (I11999_06530) | rfbA | 658695..659573 (+) | 879 | WP_023890818.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| R8953_RS03300 (I11999_06540) | rfbB | 659577..660608 (+) | 1032 | WP_023890819.1 | dTDP-glucose 4,6-dehydratase | - |
| R8953_RS03305 (I11999_06550) | - | 660605..661000 (+) | 396 | WP_002794360.1 | FdtA/QdtA family cupin domain-containing protein | - |
| R8953_RS03310 (I11999_06560) | - | 660997..661668 (+) | 672 | WP_002794362.1 | acetyltransferase | - |
| R8953_RS03315 (I11999_06570) | - | 661672..662586 (+) | 915 | WP_002794364.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36197.94 Da Isoelectric Point: 10.3698
>NTDB_id=105601 R8953_RS03285 WP_031263832.1 656840..657790(-) (waaF) [Campylobacter coli strain IDH-11999]
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIIENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIIENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
Nucleotide
Download Length: 951 bp
>NTDB_id=105601 R8953_RS03285 WP_031263832.1 656840..657790(-) (waaF) [Campylobacter coli strain IDH-11999]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACGGCACTTTTTAAAGAATTTCCTAATGCTAAAATCA
TTATAGAAAATAAAAAATCACGCTACAAGCAAGCCCTCTCTTTGCGTAAAAAACTTGGAAAAATAGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCTTCCAAGATCATTTTGCACATCCTGAAAGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACGGCACTTTTTAAAGAATTTCCTAATGCTAAAATCA
TTATAGAAAATAAAAAATCACGCTACAAGCAAGCCCTCTCTTTGCGTAAAAAACTTGGAAAAATAGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCTTCCAAGATCATTTTGCACATCCTGAAAGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
82.803 |
99.367 |
0.823 |