Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   ACFDBD_RS01480 Genome accession   NZ_CP170249
Coordinates   347246..348142 (+) Length   298 a.a.
NCBI ID   WP_002458293.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain HS01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 342246..353142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBD_RS01460 (ACFDBD_01460) - 342931..344475 (+) 1545 WP_123213710.1 NAD(P)H-binding protein -
  ACFDBD_RS01465 (ACFDBD_01465) - 344599..346068 (-) 1470 WP_002490478.1 alkaline phosphatase -
  ACFDBD_RS01470 (ACFDBD_01470) - 346365..346544 (+) 180 WP_002447010.1 hypothetical protein -
  ACFDBD_RS01475 (ACFDBD_01475) braR 346575..347240 (+) 666 WP_002447011.1 response regulator transcription factor Regulator
  ACFDBD_RS01480 (ACFDBD_01480) braS 347246..348142 (+) 897 WP_002458293.1 HAMP domain-containing sensor histidine kinase Regulator
  ACFDBD_RS01485 (ACFDBD_01485) - 348253..349002 (+) 750 WP_002490898.1 ABC transporter ATP-binding protein -
  ACFDBD_RS01490 (ACFDBD_01490) - 349004..351016 (+) 2013 WP_123213711.1 ABC transporter permease -
  ACFDBD_RS01495 (ACFDBD_01495) - 351120..351710 (+) 591 WP_002458290.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34930.56 Da        Isoelectric Point: 6.7015

>NTDB_id=1055992 ACFDBD_RS01480 WP_002458293.1 347246..348142(+) (braS) [Staphylococcus epidermidis strain HS01]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEYELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDTQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNQGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=1055992 ACFDBD_RS01480 WP_002458293.1 347246..348142(+) (braS) [Staphylococcus epidermidis strain HS01]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTATTTTCTTTACCATTTGATGCATACGTACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAACGAACATCTTAAAGATAAAGTGGCATATTTAGAATATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAATGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGCCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGGCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
CATTTTAACCGATACACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATATGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACCGGTATAGGTTTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTGAATCAGGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597

Multiple sequence alignment