Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   ACFDA8_RS01380 Genome accession   NZ_CP170248
Coordinates   324302..325198 (+) Length   298 a.a.
NCBI ID   WP_002490847.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS25     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 319302..330198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA8_RS01360 (ACFDA8_01360) - 319989..321533 (+) 1545 WP_162186644.1 NAD(P)H-binding protein -
  ACFDA8_RS01365 (ACFDA8_01365) - 321656..323125 (-) 1470 WP_002490907.1 alkaline phosphatase -
  ACFDA8_RS01370 (ACFDA8_01370) - 323421..323570 (+) 150 WP_002490882.1 hypothetical protein -
  ACFDA8_RS01375 (ACFDA8_01375) braR 323631..324296 (+) 666 WP_002486903.1 response regulator transcription factor Regulator
  ACFDA8_RS01380 (ACFDA8_01380) braS 324302..325198 (+) 897 WP_002490847.1 HAMP domain-containing sensor histidine kinase Regulator
  ACFDA8_RS01385 (ACFDA8_01385) - 325309..326058 (+) 750 WP_002490898.1 ABC transporter ATP-binding protein -
  ACFDA8_RS01390 (ACFDA8_01390) - 326060..328072 (+) 2013 WP_381403841.1 FtsX-like permease family protein -
  ACFDA8_RS01395 (ACFDA8_01395) - 328176..328766 (+) 591 WP_002490857.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34972.64 Da        Isoelectric Point: 6.7015

>NTDB_id=1055957 ACFDA8_RS01380 WP_002490847.1 324302..325198(+) (braS) [Staphylococcus epidermidis strain PS25]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYILAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEYELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDTQWASIMIEQLLNNALKYAKGKDIWIDFDVVNQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNQGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=1055957 ACFDA8_RS01380 WP_002490847.1 324302..325198(+) (braS) [Staphylococcus epidermidis strain PS25]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTATTTTCTTTACCATTTGATGCATACATACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAACGAACATCTTAAAGATAAAGTGGCATATTTAGAATATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAATGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATTACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTACA
CAAGCCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
CATTTTAACCGATACACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATATGGATAGATTTTGATGTTGTCAATCAAACTTTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTTTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTGAATCAGGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597

Multiple sequence alignment