Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8953_RS02155 Genome accession   NZ_AP028409
Coordinates   436185..437153 (-) Length   322 a.a.
NCBI ID   WP_072221098.1    Uniprot ID   -
Organism   Campylobacter coli strain IDH-11999     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431185..442153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8953_RS02135 - 432699..433332 (-) 634 Protein_415 hypothetical protein -
  R8953_RS02140 (I11999_04200) - 433498..434487 (-) 990 WP_072221100.1 siderophore ABC transporter substrate-binding protein -
  R8953_RS02145 (I11999_04210) - 434502..435257 (-) 756 WP_002777772.1 ABC transporter ATP-binding protein -
  R8953_RS02150 (I11999_04220) - 435254..436192 (-) 939 WP_072221099.1 iron chelate uptake ABC transporter family permease subunit -
  R8953_RS02155 (I11999_04230) ceuB 436185..437153 (-) 969 WP_072221098.1 ABC transporter permease Machinery gene
  R8953_RS02160 (I11999_04240) - 437239..438228 (-) 990 WP_061210690.1 phospholipase A -
  R8953_RS02165 (I11999_04250) - 438225..438800 (-) 576 WP_002858185.1 molybdenum cofactor guanylyltransferase -
  R8953_RS02170 (I11999_04260) - 438862..440169 (+) 1308 WP_072221097.1 NFACT family protein -
  R8953_RS02175 (I11999_04270) - 440171..440509 (+) 339 WP_061210687.1 hypothetical protein -
  R8953_RS02180 (I11999_04280) - 440519..441244 (+) 726 WP_072221096.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35483.38 Da        Isoelectric Point: 9.4981

>NTDB_id=105595 R8953_RS02155 WP_072221098.1 436185..437153(-) (ceuB) [Campylobacter coli strain IDH-11999]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAEASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLA
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=105595 R8953_RS02155 WP_072221098.1 436185..437153(-) (ceuB) [Campylobacter coli strain IDH-11999]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAATTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGAAGCGTC
TTTTTTTACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGCGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGCG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988

Multiple sequence alignment