Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   ACFDA5_RS01830 Genome accession   NZ_CP170246
Coordinates   402656..403552 (+) Length   298 a.a.
NCBI ID   WP_002447012.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Q8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 397656..408552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA5_RS01810 (ACFDA5_01810) - 398341..399885 (+) 1545 WP_002447008.1 NAD(P)H-binding protein -
  ACFDA5_RS01815 (ACFDA5_01815) - 400009..401478 (-) 1470 WP_002447009.1 alkaline phosphatase -
  ACFDA5_RS01820 (ACFDA5_01820) - 401775..401954 (+) 180 WP_002447010.1 hypothetical protein -
  ACFDA5_RS01825 (ACFDA5_01825) braR 401985..402650 (+) 666 WP_002447011.1 response regulator transcription factor Regulator
  ACFDA5_RS01830 (ACFDA5_01830) braS 402656..403552 (+) 897 WP_002447012.1 HAMP domain-containing sensor histidine kinase Regulator
  ACFDA5_RS01835 (ACFDA5_01835) - 403663..404412 (+) 750 WP_002495981.1 ABC transporter ATP-binding protein -
  ACFDA5_RS01840 (ACFDA5_01840) - 404414..406425 (+) 2012 Protein_364 FtsX-like permease family protein -
  ACFDA5_RS01845 (ACFDA5_01845) - 406529..407119 (+) 591 WP_002486844.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34940.56 Da        Isoelectric Point: 6.8361

>NTDB_id=1055891 ACFDA5_RS01830 WP_002447012.1 402656..403552(+) (braS) [Staphylococcus epidermidis strain Q8]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLNFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDTQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNHGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=1055891 ACFDA5_RS01830 WP_002447012.1 402656..403552(+) (braS) [Staphylococcus epidermidis strain Q8]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTATTTTCTTTACCTTTTGATGCATACGTACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAATTTTAAAAAGAACGAACATCTTAAAGATAAAGTGGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAATGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGCCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGGCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
CATTTTAACCGATACACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATATGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTTTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTGAATCATGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60

98.993

0.594

Multiple sequence alignment