Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACLV65_RS05115 Genome accession   NZ_OZ217342
Coordinates   1006094..1007164 (-) Length   356 a.a.
NCBI ID   WP_411864717.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1001094..1012164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS05090 (SMIB22_09930) mutX 1001145..1001609 (+) 465 WP_001135770.1 NUDIX hydrolase Machinery gene
  ACLV65_RS05095 (SMIB22_09940) - 1001622..1002890 (+) 1269 WP_411864714.1 dihydroorotase -
  ACLV65_RS05100 (SMIB22_09950) - 1002904..1003167 (+) 264 WP_411864715.1 hypothetical protein -
  ACLV65_RS05105 (SMIB22_09960) pdrM 1003178..1004530 (+) 1353 WP_411864716.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  ACLV65_RS05110 (SMIB22_09970) - 1004641..1005897 (-) 1257 WP_411865201.1 ISL3 family transposase -
  ACLV65_RS05115 (SMIB22_09980) xerS 1006094..1007164 (-) 1071 WP_411864717.1 tyrosine recombinase XerS Machinery gene
  ACLV65_RS05120 (SMIB22_09990) - 1007723..1009273 (-) 1551 WP_411864718.1 ClC family H(+)/Cl(-) exchange transporter -
  ACLV65_RS05125 (SMIB22_10000) - 1009289..1010068 (-) 780 WP_368079014.1 ribonuclease HII -
  ACLV65_RS05130 (SMIB22_10010) ylqF 1010055..1010906 (-) 852 WP_411864719.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41232.31 Da        Isoelectric Point: 9.6031

>NTDB_id=1055871 ACLV65_RS05115 WP_411864717.1 1006094..1007164(-) (xerS) [Streptococcus mitis isolate S. mitis B22]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNTDKMSDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRSQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1055871 ACLV65_RS05115 WP_411864717.1 1006094..1007164(-) (xerS) [Streptococcus mitis isolate S. mitis B22]
ATGAAACGTGAGATTTTACTGGAACGAATTGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTCAAGGAATATGATCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACACTGATAAAATGTCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACCAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTTT
ATCGTAATGTAATGAAGAAAGTTTCAACAAAGAAAAAGAAAGAAACACTTGCTGCCAGAGCTGAAAACATCAAGCAAAAA
CTCTTTTTAGGTGATGAAACAGAAGGTTTTCTTACTTATATTGACCAAGAGTACCCACAACAGCTCTCTAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGTGATTTGGCCATTATTGCCCTTCTCTTGGCGTCTGGTGTCCGCTTATCTGAAG
CTGTTAATCTGGATCTAAGGGATCTCAATCTAAAAATGATGGTTATCGATGTCACTCGAAAAGGGGGCAAACGTGACTCT
GTCAATGTCGCTGCTTTTGCTAAGCCTTATTTAGAGAATTATCTGGCCATTCGAAGTCAACGCTATAAGACGGAAAAAAC
AGATACAGCCCTTTTTTTGACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCCAGCGTTGAGAAAATGGTTGCTA
AGTATTCTGAGGACTTCAAAATCCGTGTAACACCCCATAAACTACGCCATACGCTAGCAACCAGGCTCTATGATGCTACT
AAATCGCAAGTTTTGGTCAGCCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATCGTCAACGA
TGAACAAAAGAATGCTCTGGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.315

100

0.983