Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | ACFDHP_RS08100 | Genome accession | NZ_CP170243 |
| Coordinates | 1608600..1609574 (+) | Length | 324 a.a. |
| NCBI ID | WP_257070565.1 | Uniprot ID | - |
| Organism | Staphylococcus hyicus strain SC307 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1603600..1614574
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDHP_RS08065 (ACFDHP_08065) | rpmG | 1604132..1604296 (+) | 165 | WP_257053265.1 | 50S ribosomal protein L33 | - |
| ACFDHP_RS08070 (ACFDHP_08070) | - | 1604409..1604948 (+) | 540 | WP_119635809.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| ACFDHP_RS08075 (ACFDHP_08075) | - | 1604966..1606405 (+) | 1440 | WP_305849953.1 | rhomboid family intramembrane serine protease | - |
| ACFDHP_RS08080 (ACFDHP_08080) | - | 1606407..1606610 (+) | 204 | WP_039645571.1 | YqgQ family protein | - |
| ACFDHP_RS08085 (ACFDHP_08085) | - | 1606607..1607593 (+) | 987 | WP_039645573.1 | ROK family glucokinase | - |
| ACFDHP_RS08090 (ACFDHP_08090) | - | 1607595..1607906 (+) | 312 | WP_039645576.1 | MTH1187 family thiamine-binding protein | - |
| ACFDHP_RS08095 (ACFDHP_08095) | - | 1607921..1608544 (+) | 624 | WP_107632997.1 | MBL fold metallo-hydrolase | - |
| ACFDHP_RS08100 (ACFDHP_08100) | comGA | 1608600..1609574 (+) | 975 | WP_257070565.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFDHP_RS08105 (ACFDHP_08105) | comGB | 1609543..1610610 (+) | 1068 | WP_119635812.1 | competence type IV pilus assembly protein ComGB | - |
| ACFDHP_RS08110 (ACFDHP_08110) | comGC | 1610622..1610942 (+) | 321 | Protein_1504 | competence type IV pilus major pilin ComGC | - |
| ACFDHP_RS08115 (ACFDHP_08115) | comGD | 1610932..1611363 (+) | 432 | WP_209260663.1 | competence type IV pilus minor pilin ComGD | - |
| ACFDHP_RS08120 (ACFDHP_08120) | - | 1611556..1612038 (+) | 483 | WP_039645587.1 | competence type IV pilus minor pilin ComGF | - |
| ACFDHP_RS08125 (ACFDHP_08125) | - | 1612022..1612219 (+) | 198 | WP_039645590.1 | hypothetical protein | - |
| ACFDHP_RS08130 (ACFDHP_08130) | - | 1612197..1612727 (+) | 531 | WP_107632993.1 | shikimate kinase | - |
| ACFDHP_RS08135 (ACFDHP_08135) | gcvT | 1612882..1613973 (+) | 1092 | WP_107632992.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37003.84 Da Isoelectric Point: 7.2046
>NTDB_id=1055844 ACFDHP_RS08100 WP_257070565.1 1608600..1609574(+) (comGA) [Staphylococcus hyicus strain SC307]
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPYDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKTMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGNSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPYDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKTMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGNSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
Nucleotide
Download Length: 975 bp
>NTDB_id=1055844 ACFDHP_RS08100 WP_257070565.1 1608600..1609574(+) (comGA) [Staphylococcus hyicus strain SC307]
ATGCAATTATTAATTGACCATGTCGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAATTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTATGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAAGCTGGACTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTACGAATAT
GAGACATTATATTATTTACGTGTTTCAACACTACCATTAAATTTAGGCAATGAAAGCTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAACCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACTTAAATATC
ATTACAATAGAAGATCCAGTCGAACAATTGCTAAATGGAGTAACACAAATATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAATTCATTAAAAGCAATATTACGGTGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGCCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGCGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGATTTATTACAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAACTAATGTCTCAAGATGATATACGGTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
ATGCAATTATTAATTGACCATGTCGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAATTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTATGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAAGCTGGACTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTACGAATAT
GAGACATTATATTATTTACGTGTTTCAACACTACCATTAAATTTAGGCAATGAAAGCTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAACCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACTTAAATATC
ATTACAATAGAAGATCCAGTCGAACAATTGCTAAATGGAGTAACACAAATATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAATTCATTAAAAGCAATATTACGGTGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGCCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGCGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGATTTATTACAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAACTAATGTCTCAAGATGATATACGGTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.204 |
99.691 |
0.58 |
| comGA | Staphylococcus aureus N315 |
58.204 |
99.691 |
0.58 |