Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACLV65_RS00325 Genome accession   NZ_OZ217342
Coordinates   59444..60214 (+) Length   256 a.a.
NCBI ID   WP_411864238.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54444..65214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS00310 (SMIB22_00590) - 56085..56522 (+) 438 WP_261061968.1 CoA-binding protein -
  ACLV65_RS00315 (SMIB22_00600) - 56697..57707 (-) 1011 WP_411864237.1 YeiH family protein -
  ACLV65_RS00320 (SMIB22_00610) - 58278..59447 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  ACLV65_RS00325 (SMIB22_00620) recO 59444..60214 (+) 771 WP_411864238.1 DNA repair protein RecO Machinery gene
  ACLV65_RS00330 (SMIB22_00630) plsX 60211..61203 (+) 993 WP_411864239.1 phosphate acyltransferase PlsX -
  ACLV65_RS00335 (SMIB22_00640) - 61209..61442 (+) 234 WP_000136445.1 acyl carrier protein -
  ACLV65_RS00340 (SMIB22_00650) - 61777..62946 (+) 1170 WP_033675638.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACLV65_RS00345 (SMIB22_00660) - 63099..63245 (+) 147 WP_000425304.1 smi_0057.1 family bacteriocin-like peptide -
  ACLV65_RS00350 - 63810..64625 (+) 816 WP_411864240.1 GHKL domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29848.30 Da        Isoelectric Point: 5.0208

>NTDB_id=1055809 ACLV65_RS00325 WP_411864238.1 59444..60214(+) (recO) [Streptococcus mitis isolate S. mitis B22]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQSLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIG
QAFDFSFKYGACLCPEHYYEDERRCHLNPNVPYLLNQFQAIDFETLETISLKPEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1055809 ACLV65_RS00325 WP_411864238.1 59444..60214(+) (recO) [Streptococcus mitis isolate S. mitis B22]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGCAATTTTCGTGAGGATGATAAGCTAGTCAAGATTTT
TACTGAGCAGGCTGGTAAGCGGATGTTTTTCGTCAAACATGCTGGCCAGTCCAAACTGGCTCCTGTTATTCAGTCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGGCTTAGCTACATTGAAGACTATCATGAGGTGATGACTTTTCCC
AAGATTAATAGCGATCTCTTTGTCATGGCTTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCTGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGATTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGCGCCTGCCTCTGTCCAGAGCATTATTATGAGGATGAGAGACGATGTCATCT
AAATCCCAATGTTCCTTATTTGCTCAATCAGTTTCAAGCCATTGATTTTGAAACCTTGGAGACCATTTCGCTCAAGCCTG
AAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

97.266

100

0.973