Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ACFDHR_RS12815 Genome accession   NZ_CP170238
Coordinates   2567985..2568707 (+) Length   240 a.a.
NCBI ID   WP_039644708.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC360     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2562985..2573707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHR_RS12790 (ACFDHR_12785) - 2563281..2564330 (-) 1050 WP_305850354.1 hypothetical protein -
  ACFDHR_RS12795 (ACFDHR_12790) - 2564496..2565293 (+) 798 WP_039644715.1 carbon-nitrogen family hydrolase -
  ACFDHR_RS12800 (ACFDHR_12795) - 2565943..2566506 (+) 564 WP_257054490.1 accessory gene regulator AgrB -
  ACFDHR_RS12805 (ACFDHR_12800) agrD 2566509..2566643 (+) 135 WP_107633492.1 cyclic lactone autoinducer peptide AgrD -
  ACFDHR_RS12810 (ACFDHR_12805) agrC 2566673..2567971 (+) 1299 WP_107633493.1 quorum-sensing sensor histidine kinase AgrC -
  ACFDHR_RS12815 (ACFDHR_12810) agrA 2567985..2568707 (+) 723 WP_039644708.1 quorum-sensing response regulator AgrA Regulator
  ACFDHR_RS12820 (ACFDHR_12815) - 2568770..2570269 (-) 1500 WP_119635848.1 sucrose-6-phosphate hydrolase -
  ACFDHR_RS12825 (ACFDHR_12820) - 2570608..2570832 (-) 225 WP_039644706.1 sulfurtransferase TusA family protein -
  ACFDHR_RS12830 (ACFDHR_12825) - 2570857..2571939 (-) 1083 WP_119635847.1 YeeE/YedE family protein -
  ACFDHR_RS12835 (ACFDHR_12830) - 2572119..2572754 (-) 636 WP_039644703.1 redox-sensing transcriptional repressor Rex -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28228.36 Da        Isoelectric Point: 5.4121

>NTDB_id=1055793 ACFDHR_RS12815 WP_039644708.1 2567985..2568707(+) (agrA) [Staphylococcus hyicus strain SC360]
MKILICEDDPKQRERMESIIQNYIMIEEKPMEIEISTSDPYALLEASKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDIDELRTRIIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDSRFFRCHNSFVLNRHNISHVDAKERIVYFKNDEFCYVSVRNIKKIKK

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1055793 ACFDHR_RS12815 WP_039644708.1 2567985..2568707(+) (agrA) [Staphylococcus hyicus strain SC360]
TTGAAGATATTAATTTGTGAGGATGACCCTAAACAAAGAGAGCGAATGGAATCCATCATTCAAAATTATATTATGATTGA
AGAAAAGCCCATGGAAATTGAAATTTCTACAAGTGACCCATACGCGTTACTTGAGGCTTCAAAAAACATGACCGATATTG
GGTGTTACTTTTTAGATATCCAATTAGAATCTGATATTAATGGCATTAAGCTTGGCAGTGAAATTAGAAAACATGATCCC
GTAGGTAATATTATTTTTGTGACAAGCCATAGTGAATTAACGTATTTGACATTCGTTTATAAACTTGCTGCTATGGATTT
TATATTCAAAGACGATATTGATGAATTACGAACGCGCATTATTGATTGTCTTGAAACTGCGCTCAAACGGTTGGATTTAC
TTACTAAAGATAACACTGTAGAAACAATGGAATTAAAACAAGGCAGTAATTCTGTATATGTCAACTATGATGATGTCATG
TTTTTTGAATCTTCACCTAAGTCACATCGACTCATAGCTCACTTAGATAATCGACAAATTGAGTTTTATGGTAATTTAAG
GGAACTTGCACAAATTGATAGTCGCTTTTTTAGATGCCATAACAGTTTTGTTTTAAATCGTCATAACATCTCTCATGTTG
ATGCTAAAGAGCGTATTGTTTATTTTAAAAATGATGAGTTTTGCTATGTGTCAGTTAGAAATATAAAAAAAATCAAGAAA
TAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813

Multiple sequence alignment