Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   ACFDHR_RS03280 Genome accession   NZ_CP170238
Coordinates   655193..656104 (-) Length   303 a.a.
NCBI ID   WP_305850467.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC360     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 650193..661104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHR_RS03260 (ACFDHR_03260) spn 650975..651295 (+) 321 WP_039643670.1 SPIN family peroxidase inhibitor -
  ACFDHR_RS03265 (ACFDHR_03265) - 651527..652153 (+) 627 WP_305850465.1 FMN-dependent NADH-azoreductase -
  ACFDHR_RS03270 (ACFDHR_03270) - 652390..654351 (-) 1962 WP_305850466.1 ABC transporter permease -
  ACFDHR_RS03275 (ACFDHR_03275) - 654353..655102 (-) 750 WP_039643665.1 ABC transporter ATP-binding protein -
  ACFDHR_RS03280 (ACFDHR_03280) braS 655193..656104 (-) 912 WP_305850467.1 sensor histidine kinase Regulator
  ACFDHR_RS03285 (ACFDHR_03285) braR 656113..656778 (-) 666 WP_305850468.1 response regulator transcription factor Regulator
  ACFDHR_RS03290 (ACFDHR_03290) - 656909..657346 (+) 438 WP_209260594.1 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein -
  ACFDHR_RS03295 (ACFDHR_03295) - 657933..658850 (-) 918 WP_257071200.1 HAMP domain-containing sensor histidine kinase -
  ACFDHR_RS03300 (ACFDHR_03300) - 658867..659619 (-) 753 WP_167696245.1 hypothetical protein -
  ACFDHR_RS03305 (ACFDHR_03305) - 659612..660526 (-) 915 WP_257071197.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35443.31 Da        Isoelectric Point: 7.6257

>NTDB_id=1055765 ACFDHR_RS03280 WP_305850467.1 655193..656104(-) (braS) [Staphylococcus hyicus strain SC360]
MCVRFYNHILSDVCIYVLMLMLFLFISLIYDFETEAYILTLSVSLFVFSLYIIVKWAYFKKQETLKQTNERLASELQHVK
MMHRDYQRDLEHYFLTWVHQIKTPITASKLLLERNEAGMVNRVRQEITEIENYTNLALNYLKLLSHETDMVVQKVALDDI
VKPLIQRYALHFIEHRTRIHTEHLHCTVTTDAQWTKIMIEQILNNALKYAKGGDIWIEFDAHKQQLTIKDNGMGISKADL
PKIFEKGYSGTNGRLNDKSSGIGLFIVKEISEKLQHPITVQSELGVLTQFTIQFPKTSHLTIM

Nucleotide


Download         Length: 912 bp        

>NTDB_id=1055765 ACFDHR_RS03280 WP_305850467.1 655193..656104(-) (braS) [Staphylococcus hyicus strain SC360]
ATGTGTGTGCGCTTTTATAACCATATTTTAAGTGATGTTTGTATTTATGTACTCATGTTAATGTTGTTTTTATTTATATC
ATTAATCTATGACTTCGAAACGGAAGCCTATATTTTAACGTTATCCGTCTCACTCTTTGTGTTTAGTTTGTATATCATAG
TGAAGTGGGCCTATTTTAAAAAACAAGAAACATTAAAACAAACTAATGAGCGTTTGGCATCTGAATTGCAACACGTAAAA
ATGATGCATCGTGACTATCAACGAGATTTGGAACATTACTTTTTAACTTGGGTGCATCAAATTAAAACACCCATAACTGC
ATCCAAACTCTTGTTAGAGCGTAATGAAGCGGGGATGGTAAATCGCGTGCGTCAAGAAATTACAGAAATTGAGAATTATA
CGAATTTGGCGTTGAATTATTTAAAACTATTAAGTCATGAAACCGATATGGTTGTTCAAAAAGTCGCACTTGATGACATC
GTGAAACCGCTCATTCAACGTTATGCGTTACATTTTATTGAACATCGCACACGCATTCATACTGAACATTTACATTGTAC
GGTCACTACAGATGCACAATGGACTAAAATTATGATTGAACAAATTTTAAACAATGCTCTGAAATATGCGAAAGGTGGAG
ACATCTGGATTGAGTTTGATGCACACAAACAACAACTCACCATTAAAGATAATGGTATGGGGATTAGTAAAGCAGATTTA
CCCAAAATATTTGAAAAAGGATATTCTGGGACGAACGGGCGCCTAAATGATAAATCTAGCGGAATAGGATTGTTTATCGT
GAAAGAAATTTCAGAGAAACTTCAGCACCCGATTACCGTTCAATCAGAATTAGGCGTTTTAACACAATTTACGATTCAGT
TCCCTAAAACGTCTCATCTTACAATTATGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(195-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

50.859

96.04

0.488

Multiple sequence alignment