Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8622_RS03375 Genome accession   NZ_AP028408
Coordinates   645198..645635 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain IDH-11860     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640198..650635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8622_RS03355 (I11860_06670) kdpD 640687..642510 (+) 1824 WP_317648563.1 DUF4118 domain-containing protein -
  R8622_RS03360 (I11860_06680) uvrB 642612..644585 (-) 1974 WP_002864735.1 excinuclease ABC subunit UvrB -
  R8622_RS03365 (I11860_06690) - 644739..644969 (+) 231 WP_002852327.1 hypothetical protein -
  R8622_RS03370 (I11860_06700) - 644959..645201 (+) 243 WP_002854947.1 hypothetical protein -
  R8622_RS03375 (I11860_06710) Cj0683 645198..645635 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8622_RS03380 (I11860_06720) priA 645617..647470 (+) 1854 WP_002859601.1 primosomal protein N' -
  R8622_RS03385 cipA 647480..648872 (-) 1393 Protein_653 DUF2972 domain-containing protein -
  R8622_RS03390 (I11860_06750) ispG 649018..650091 (+) 1074 WP_002868411.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=105568 R8622_RS03375 WP_002852324.1 645198..645635(+) (Cj0683) [Campylobacter jejuni strain IDH-11860]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=105568 R8622_RS03375 WP_002852324.1 645198..645635(+) (Cj0683) [Campylobacter jejuni strain IDH-11860]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment