Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   ACLV7H_RS09240 Genome accession   NZ_OZ217340
Coordinates   1801471..1804008 (-) Length   845 a.a.
NCBI ID   WP_411866988.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1796471..1809008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS09215 (SORA22_18580) ruvA 1796973..1797566 (-) 594 WP_000273410.1 Holliday junction branch migration protein RuvA Machinery gene
  ACLV7H_RS09220 (SORA22_18590) - 1797726..1798223 (+) 498 WP_227232030.1 helix-turn-helix domain-containing protein -
  ACLV7H_RS09225 (SORA22_18600) hexB 1798376..1800325 (-) 1950 WP_227232029.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACLV7H_RS09230 (SORA22_18610) - 1800535..1800975 (+) 441 WP_411866986.1 LytTR family DNA-binding domain-containing protein -
  ACLV7H_RS09235 (SORA22_18620) - 1800972..1801430 (+) 459 WP_411866987.1 DUF3021 domain-containing protein -
  ACLV7H_RS09240 (SORA22_18630) hexA 1801471..1804008 (-) 2538 WP_411866988.1 DNA mismatch repair protein MutS Machinery gene
  ACLV7H_RS09245 (SORA22_18650) argR 1804059..1804505 (-) 447 WP_001231483.1 arginine repressor -
  ACLV7H_RS09250 (SORA22_18660) argS 1804660..1806351 (+) 1692 WP_411866989.1 arginine--tRNA ligase -
  ACLV7H_RS09255 (SORA22_18670) - 1806840..1807085 (+) 246 WP_411866990.1 MarR family transcriptional regulator -
  ACLV7H_RS09260 (SORA22_18680) - 1807284..1808546 (+) 1263 WP_411866991.1 NRAMP family divalent metal transporter -

Sequence


Protein


Download         Length: 845 a.a.        Molecular weight: 94758.18 Da        Isoelectric Point: 4.8868

>NTDB_id=1055673 ACLV7H_RS09240 WP_411866988.1 1801471..1804008(-) (hexA) [Streptococcus oralis isolate S. oralis A22]
MATEKLSPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAINAAQILEISLTSRNKNAENPIPMAGVPYHSAQQYIDVLI
EQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGTVVDSSKPDSQNNFLVALDRDGNQFGLAYMDLVTGDFYVTGLLDFTL
VCGEIRNLKAREVVLGYDLSEEEEQILSRQMNLVLSYEKEGFEDIHLLDPRLAAVEQAAASKLLQYVHRTQMRELNHLKP
VIRYEIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLDETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFF
ERSDLTDSLKGVYDIERLASRVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPALAYLIEQLDAIPELESLISAAIAP
EAPHVITEGGIIRTGFDETLDKYRRVLREGTSWIAEIEAKERENSGISTLKIDYNKKDGYYFHVTNSQLGNVPAHFFRKA
TLKNSERFGTEELARIEGDMLEAREKSANLEYEIFMRIREEVSKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFG
DDSQIDIQKGRHAVVEKVMGAQTYIPNSIQMSEDTSIQLITGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAYLPIFDA
IFTRIGAADDLVSGQSTFMVEMMEANNAISHATKDSLILFDELGRGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHEL
TSLESSLKHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKIAGLPGELLARADKILTQLESQGGESPAPMRQTSA
VANEQISLFDTPAEHPILAELAKLDVYNMTPMQAMNVLVEFKQKL

Nucleotide


Download         Length: 2538 bp        

>NTDB_id=1055673 ACLV7H_RS09240 WP_411866988.1 1801471..1804008(-) (hexA) [Streptococcus oralis isolate S. oralis A22]
ATGGCAACAGAAAAGCTATCACCCGGCATGCAACAGTATGTGGATATTAAAAAACAATACCCAGATGCTTTTTTGCTTTT
TCGAATGGGTGATTTTTACGAGTTGTTCTATGAAGATGCAATTAATGCAGCACAAATTTTAGAAATTTCCTTAACAAGTC
GGAATAAAAATGCAGAAAATCCGATACCCATGGCAGGTGTCCCCTATCATTCTGCCCAGCAGTATATCGACGTATTGATC
GAGCAGGGCTATAAGGTGGCCATAGCCGAGCAGATGGAAGATCCCAAACAAGCAGTGGGGGTTGTCAAGCGAGAGGTGGT
TCAGGTCATCACACCTGGTACAGTAGTCGATAGCAGTAAGCCCGATAGTCAGAATAATTTCTTGGTTGCCTTAGATCGTG
ATGGCAATCAATTTGGCCTGGCTTATATGGATCTAGTGACAGGTGATTTTTATGTGACAGGTTTATTGGATTTTACTCTC
GTTTGTGGGGAAATTCGTAACCTCAAGGCTCGAGAAGTGGTGCTGGGTTATGACTTGTCTGAGGAAGAAGAACAAATCCT
CAGTCGTCAGATGAATCTTGTGCTTTCCTATGAGAAGGAAGGCTTTGAGGATATTCATTTACTGGATCCACGCCTGGCAG
CTGTGGAGCAAGCGGCAGCTAGTAAGCTTCTACAGTATGTTCACCGGACCCAGATGCGGGAATTGAACCATCTCAAACCA
GTTATCCGCTATGAAATCAAAGATTTCTTACAGATGGATTATGCGACCAAGGCCAGTCTGGATTTGGTTGAAAATGCCCG
TTCAGGCAAGAAGCAAGGGAGTCTTTTTTGGCTTTTGGACGAAACCAAAACGGCTATGGGTATGCGGCTCTTACGGTCTT
GGATTCATCGTCCCTTGATTGATAAGGAACGAATTGTCCAACGTCAAGAGGTGGTGCAGGTCTTTCTTGACCACTTCTTT
GAGCGCAGTGATTTAACGGACAGTCTCAAGGGTGTTTATGATATCGAACGTTTGGCTAGTCGGGTTTCTTTTGGCAAGAC
CAATCCCAAGGATCTCTTGCAATTGGCGACCACCTTATCCAGTGTACCACGGATTCGTGCGATTTTAGAAGGCATGGAGC
AACCTGCCCTGGCCTATCTTATCGAACAGTTAGATGCCATCCCTGAGTTGGAGAGCTTGATTAGTGCTGCCATTGCTCCT
GAAGCTCCTCACGTGATTACGGAAGGTGGCATTATCCGTACGGGATTTGATGAGACCTTGGATAAATACCGTCGTGTTCT
CAGAGAAGGGACTAGCTGGATTGCTGAGATTGAGGCTAAGGAGAGAGAAAACTCTGGCATCAGCACTCTCAAGATTGACT
ACAATAAAAAGGACGGCTACTATTTCCATGTGACTAATTCGCAACTGGGAAATGTGCCAGCCCACTTTTTCCGCAAGGCA
ACGCTGAAAAACTCAGAACGCTTTGGTACCGAAGAATTAGCCCGTATCGAGGGAGATATGCTGGAGGCGCGTGAGAAGTC
AGCCAACCTAGAATATGAAATCTTTATGCGTATCCGTGAAGAGGTCAGCAAGTACATTCAGCGTTTGCAGGCTTTAGCCC
AAGGAATTGCGACGGTTGATGTCTTGCAAAGTCTCGCAGTTGTGGCTGAAACACAGCATTTGATCCGACCTGAGTTTGGG
GATGATTCACAAATCGATATCCAAAAGGGACGCCATGCTGTCGTCGAAAAGGTCATGGGAGCTCAGACCTACATTCCAAA
CAGTATCCAGATGTCAGAAGACACCAGTATTCAGCTAATTACAGGGCCCAACATGAGTGGGAAGTCTACTTATATGCGCC
AGTTAGCTATGACGGCGGTTATGGCCCAGCTAGGCTCGTATGTGCCGGCTGAGAGCGCCTACTTGCCTATCTTCGATGCT
ATCTTTACTCGCATCGGAGCGGCAGATGACTTGGTTTCAGGTCAATCAACCTTTATGGTGGAGATGATGGAGGCTAACAA
TGCCATTTCGCATGCGACCAAGGACTCCTTGATTCTCTTTGATGAGTTAGGACGGGGAACTGCGACTTATGACGGGATGG
CTCTTGCCCAGTCCATCATCGAATATATTCATGAACATATCGGAGCCAAAACTCTCTTTGCGACCCACTACCATGAGTTG
ACTAGTCTGGAGTCCAGCTTAAAACACTTGGTCAATGTCCATGTGGCGACCTTGGAGCAGGATGGGCAGGTTACCTTCCT
TCATAAGATCGAACCAGGACCAGCTGACAAATCCTACGGTATCCATGTGGCTAAGATTGCTGGCTTGCCAGGAGAACTTT
TAGCAAGGGCGGATAAGATATTGACTCAACTGGAGAGTCAAGGGGGAGAAAGTCCTGCTCCGATGAGGCAAACTAGCGCC
GTAGCCAATGAACAAATTTCATTATTTGACACGCCAGCAGAACATCCTATCCTAGCAGAATTAGCTAAACTGGATGTGTA
CAATATGACACCTATGCAGGCTATGAATGTCTTAGTTGAGTTCAAACAAAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

95.74

100

0.957

  mutS Pseudomonas stutzeri strain ATCC 17587

36.799

100

0.373