Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ACFDHY_RS07820 Genome accession   NZ_CP170216
Coordinates   1517182..1517904 (+) Length   240 a.a.
NCBI ID   WP_305851417.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC393     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512182..1522904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHY_RS07795 (ACFDHY_07795) - 1512476..1513525 (-) 1050 WP_305850354.1 hypothetical protein -
  ACFDHY_RS07800 (ACFDHY_07800) - 1513691..1514488 (+) 798 WP_039644715.1 carbon-nitrogen family hydrolase -
  ACFDHY_RS07805 (ACFDHY_07805) - 1515138..1515701 (+) 564 WP_167694633.1 accessory gene regulator AgrB -
  ACFDHY_RS07810 (ACFDHY_07810) agrD 1515704..1515838 (+) 135 WP_167694634.1 cyclic lactone autoinducer peptide AgrD -
  ACFDHY_RS07815 (ACFDHY_07815) agrC 1515870..1517168 (+) 1299 WP_167694635.1 quorum-sensing sensor histidine kinase AgrC -
  ACFDHY_RS07820 (ACFDHY_07820) agrA 1517182..1517904 (+) 723 WP_305851417.1 quorum-sensing response regulator AgrA Regulator
  ACFDHY_RS07825 (ACFDHY_07825) - 1517968..1519467 (-) 1500 WP_305851416.1 sucrose-6-phosphate hydrolase -
  ACFDHY_RS07830 (ACFDHY_07830) - 1519806..1520030 (-) 225 WP_039644706.1 sulfurtransferase TusA family protein -
  ACFDHY_RS07835 (ACFDHY_07835) - 1520055..1521137 (-) 1083 WP_381419493.1 YeeE/YedE family protein -
  ACFDHY_RS07840 (ACFDHY_07840) - 1521317..1521952 (-) 636 WP_305851415.1 redox-sensing transcriptional repressor Rex -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28244.36 Da        Isoelectric Point: 5.4121

>NTDB_id=1055564 ACFDHY_RS07820 WP_305851417.1 1517182..1517904(+) (agrA) [Staphylococcus hyicus strain SC393]
MKILICEDDPKQRERMESIIQNYIMIEEKPMEIEISTSDPYALLEASKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDIDELRTRIIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDSRFYRCHNSFVLNRHNISHVDAKERIVYFKNDEFCYVSVRNIKKIKK

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1055564 ACFDHY_RS07820 WP_305851417.1 1517182..1517904(+) (agrA) [Staphylococcus hyicus strain SC393]
TTGAAGATATTAATTTGTGAGGATGACCCTAAACAAAGAGAGCGAATGGAATCCATCATTCAAAATTATATTATGATTGA
AGAAAAGCCCATGGAAATTGAAATTTCTACAAGTGACCCATACGCGTTACTTGAGGCTTCAAAAAACATGACCGATATTG
GGTGTTACTTTTTAGATATCCAATTAGAATCTGATATTAATGGCATTAAGCTTGGCAGTGAAATTAGAAAACATGATCCC
GTAGGTAATATTATTTTTGTGACAAGCCATAGTGAATTAACGTATTTGACATTCGTTTATAAACTTGCTGCTATGGATTT
TATATTCAAAGACGATATTGATGAATTACGAACGCGCATTATTGATTGTCTTGAAACTGCGCTCAAACGGCTGGATTTAC
TTACTAAAGATAACACTGTAGAAACAATGGAATTAAAACAAGGCAGTAATTCTGTATATGTCAACTATGATGATGTCATG
TTTTTTGAATCTTCACCTAAGTCACATCGACTCATAGCTCACTTAGATAATCGACAAATTGAGTTTTATGGTAATTTAAG
GGAACTTGCACAAATTGATAGTCGCTTTTATAGATGCCATAACAGTTTTGTTTTAAATCGTCATAACATCTCTCATGTTG
ATGCTAAAGAGCGTATTGTTTATTTTAAAAATGATGAGTTTTGCTATGTGTCAGTTAGAAATATAAAAAAAATCAAGAAA
TAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.513

99.167

0.808

Multiple sequence alignment