Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACOERG_RS23870 Genome accession   NZ_OZ204848
Coordinates   4906411..4906887 (+) Length   158 a.a.
NCBI ID   WP_001354455.1    Uniprot ID   -
Organism   Escherichia coli strain ST38 isolate 1697008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4901411..4911887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOERG_RS23840 (EB1697008_24180) - 4902105..4902893 (+) 789 WP_000816188.1 hypothetical protein -
  ACOERG_RS23845 (EB1697008_24185) - 4902890..4903840 (-) 951 WP_000157733.1 hypothetical protein -
  ACOERG_RS23850 (EB1697008_24190) - 4903946..4904830 (+) 885 WP_191654232.1 GTPase family protein -
  ACOERG_RS23855 (EB1697008_24195) - 4904805..4904936 (-) 132 WP_309807509.1 hypothetical protein -
  ACOERG_RS23860 (EB1697008_24200) - 4905016..4905834 (+) 819 WP_001234688.1 DUF932 domain-containing protein -
  ACOERG_RS23865 (EB1697008_24205) - 4905916..4906395 (+) 480 WP_000860074.1 antirestriction protein -
  ACOERG_RS23870 (EB1697008_24210) radC 4906411..4906887 (+) 477 WP_001354455.1 JAB domain-containing protein Machinery gene
  ACOERG_RS23875 (EB1697008_24215) - 4906950..4907171 (+) 222 WP_000692303.1 DUF987 domain-containing protein -
  ACOERG_RS23880 (EB1697008_24220) - 4907190..4907834 (+) 645 WP_045146861.1 hypothetical protein -
  ACOERG_RS23885 (EB1697008_24225) - 4907884..4908252 (+) 369 WP_001354195.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACOERG_RS23890 (EB1697008_24230) - 4908342..4908716 (+) 375 WP_000854697.1 TA system toxin CbtA family protein -
  ACOERG_RS23895 - 4908713..4908878 (+) 166 Protein_4668 DUF5983 family protein -
  ACOERG_RS23900 - 4908941..4909138 (+) 198 WP_171946042.1 DUF957 domain-containing protein -
  ACOERG_RS23905 (EB1697008_24235) - 4909223..4910065 (+) 843 WP_021562929.1 DUF4942 domain-containing protein -
  ACOERG_RS23910 rhuM 4910302..4910429 (+) 128 Protein_4671 RhuM family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17715.32 Da        Isoelectric Point: 7.2519

>NTDB_id=1055558 ACOERG_RS23870 WP_001354455.1 4906411..4906887(+) (radC) [Escherichia coli strain ST38 isolate 1697008]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1055558 ACOERG_RS23870 WP_001354455.1 4906411..4906887(+) (radC) [Escherichia coli strain ST38 isolate 1697008]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392