Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8567_RS05535 Genome accession   NZ_AP028407
Coordinates   1085990..1086436 (-) Length   148 a.a.
NCBI ID   WP_002785938.1    Uniprot ID   A0A693QN79
Organism   Campylobacter coli strain IDH-11847     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1080990..1091436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8567_RS05520 (I11847_10760) flgH 1082240..1082938 (+) 699 WP_002776446.1 flagellar basal body L-ring protein FlgH -
  R8567_RS05525 (I11847_10770) ispG 1083022..1084095 (-) 1074 WP_057991519.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  R8567_RS05530 (I11847_10780) - 1084155..1085993 (-) 1839 WP_317645600.1 primosomal protein N' -
  R8567_RS05535 (I11847_10790) Cj0683 1085990..1086436 (-) 447 WP_002785938.1 type II secretion system protein Machinery gene
  R8567_RS05540 (I11847_10800) - 1086433..1086678 (-) 246 WP_002776428.1 hypothetical protein -
  R8567_RS05545 (I11847_10810) - 1086668..1086898 (-) 231 WP_002776426.1 hypothetical protein -
  R8567_RS05550 (I11847_10820) uvrB 1087052..1089025 (+) 1974 WP_002822663.1 excinuclease ABC subunit UvrB -
  R8567_RS05555 (I11847_10830) - 1089060..1090484 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17312.23 Da        Isoelectric Point: 8.7735

>NTDB_id=105554 R8567_RS05535 WP_002785938.1 1085990..1086436(-) (Cj0683) [Campylobacter coli strain IDH-11847]
MKKAFTLLELVFVILILGILASLSFSFVNQNKNDAKLLKLKIDYEMLNSALSLMRTQTELKQINAFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNAKEWVDFFYNANFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=105554 R8567_RS05535 WP_002785938.1 1085990..1086436(-) (Cj0683) [Campylobacter coli strain IDH-11847]
ATGAAAAAGGCTTTTACTCTTTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTAGCAAGTTTAAGCTTCTCTTT
TGTCAATCAAAATAAAAATGATGCAAAATTGTTAAAATTAAAAATAGATTATGAAATGCTAAATTCAGCCCTGTCTCTTA
TGCGCACTCAGACTGAACTTAAGCAAATCAATGCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAGCTATTTTACTGTCAAACTAGCCAAAATTGCACTTATTCTTTACTTCACACACCCATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAACCGATATAGATTTTTTTTAAATGCAAAAGAATGGGTTGATTTTTTTTATAATGCCAATTTTG
CTATTTTAGAATGTCTTAGTGAAAAATATTGTAAAGAATTGTTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A693QN79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.459

100

0.595

Multiple sequence alignment