Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACFDAU_RS07540 Genome accession   NZ_CP170197
Coordinates   1536177..1537538 (+) Length   453 a.a.
NCBI ID   WP_413439354.1    Uniprot ID   -
Organism   Sulfuriferula sp. GW1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1531177..1542538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDAU_RS07515 (ACFDAU_07515) pyrF 1531245..1531952 (+) 708 WP_413439349.1 orotidine-5'-phosphate decarboxylase -
  ACFDAU_RS07520 (ACFDAU_07520) - 1531949..1533271 (+) 1323 WP_413439350.1 UDP-glucose dehydrogenase family protein -
  ACFDAU_RS07525 (ACFDAU_07525) rfaE1 1533268..1534206 (+) 939 WP_413439351.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  ACFDAU_RS07530 (ACFDAU_07530) rfaD 1534209..1535210 (+) 1002 WP_413439352.1 ADP-glyceromanno-heptose 6-epimerase -
  ACFDAU_RS07535 (ACFDAU_07535) cysM 1535214..1536107 (+) 894 WP_413439353.1 cysteine synthase CysM -
  ACFDAU_RS07540 (ACFDAU_07540) radA 1536177..1537538 (+) 1362 WP_413439354.1 DNA repair protein RadA Machinery gene
  ACFDAU_RS07545 (ACFDAU_07545) - 1537550..1538884 (-) 1335 WP_413439355.1 protein kinase domain-containing protein -
  ACFDAU_RS07550 (ACFDAU_07550) - 1538877..1539626 (-) 750 WP_413439356.1 YciK family oxidoreductase -
  ACFDAU_RS07555 (ACFDAU_07555) hpnE 1539623..1540900 (-) 1278 WP_413439357.1 hydroxysqualene dehydroxylase HpnE -
  ACFDAU_RS07560 (ACFDAU_07560) hpnD 1540897..1541730 (-) 834 WP_413439358.1 presqualene diphosphate synthase HpnD -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48336.72 Da        Isoelectric Point: 6.9490

>NTDB_id=1055503 ACFDAU_RS07540 WP_413439354.1 1536177..1537538(+) (radA) [Sulfuriferula sp. GW1]
MAKAKTLYSCTECGDTLSKWQGQCPSCKAWNTLVETVAEAAAPSRYSALSVVSEVLSLAEVEAVEDERVVTGISELDRVL
GGGVVKGGVVLIGGDPGIGKSTLLLQALSGMSAAHKTLYVSGEESARQIALRAHRLQLDAAELQLLAEIQLEKILATLNQ
HKPFIAVIDSIQTVYSEALQSAPGSVAQVRECAAQLTRYAKQTGTVIFLVGHVTKEGALAGPRVLEHIVDTVLYFEGDTS
SAFRLVRAFKNRFGAVNELGVFAMTDKGLKGVSNPSAIFLSGHSADVPGSCVMVTQEGTRPLLVEIQALVESSQSPNPRR
LSVGLEQNRLAMLLAVLHRHAGLACYDQDVFINAVGGVRINEPAADLPLLLAIVSSFKNKAMPDKLVVFGEVGLAGEIRP
VQRGQERLKEAAKLGFTRAIVPAANKPRQAISGMEIIAVERLQDAVTYLREHG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1055503 ACFDAU_RS07540 WP_413439354.1 1536177..1537538(+) (radA) [Sulfuriferula sp. GW1]
ATGGCTAAAGCAAAAACCCTCTATTCCTGCACCGAATGCGGCGACACCCTGAGCAAGTGGCAAGGCCAGTGCCCTTCCTG
CAAAGCCTGGAATACGCTGGTGGAAACCGTTGCCGAGGCCGCCGCGCCGTCGCGTTACAGTGCGCTGTCGGTGGTGAGCG
AGGTGTTGTCACTGGCTGAGGTGGAGGCGGTGGAGGACGAGCGCGTTGTCACCGGCATCAGTGAGCTGGATCGAGTGCTG
GGCGGCGGGGTGGTGAAGGGCGGGGTGGTACTGATCGGTGGGGATCCGGGCATCGGCAAATCCACGCTGCTGCTGCAGGC
GCTGTCCGGCATGAGCGCGGCGCACAAGACGCTGTATGTGAGCGGCGAGGAATCGGCACGGCAGATCGCCTTGCGCGCGC
ATCGCTTGCAACTGGATGCGGCGGAACTGCAGTTGCTGGCGGAAATCCAGCTGGAAAAAATTCTTGCCACGCTCAACCAG
CACAAACCTTTCATCGCGGTGATTGATTCCATCCAGACGGTTTATTCCGAGGCCTTGCAATCGGCGCCCGGATCGGTGGC
GCAGGTGCGCGAGTGTGCGGCGCAATTGACGCGCTACGCCAAGCAGACCGGCACGGTGATTTTTCTGGTCGGCCACGTGA
CCAAGGAAGGTGCGCTGGCCGGGCCGCGCGTGCTCGAGCATATCGTCGATACGGTGTTGTACTTCGAGGGCGACACCAGT
TCCGCTTTTCGGCTGGTGCGGGCGTTCAAGAACCGTTTTGGCGCAGTGAACGAACTGGGCGTGTTCGCGATGACCGACAA
GGGGTTGAAAGGCGTATCCAATCCGTCGGCGATTTTCCTGTCCGGGCATAGTGCGGACGTGCCCGGATCGTGCGTGATGG
TGACCCAGGAAGGCACGCGCCCCTTGCTGGTGGAGATTCAGGCGCTGGTGGAGTCGTCGCAGTCGCCCAATCCGCGCAGG
CTCAGTGTCGGTCTGGAGCAGAATCGGTTAGCCATGCTGCTGGCGGTGTTGCACCGCCATGCGGGGCTGGCGTGTTACGA
CCAGGATGTGTTCATCAACGCCGTGGGCGGGGTGCGTATCAACGAGCCGGCAGCGGATTTGCCGTTGCTGCTGGCGATAG
TTTCATCCTTCAAAAACAAGGCAATGCCGGATAAACTTGTGGTGTTTGGCGAGGTAGGGCTGGCGGGAGAAATCCGGCCG
GTACAGCGTGGGCAGGAGCGCCTGAAGGAGGCCGCCAAGCTGGGTTTCACCCGTGCCATTGTACCTGCGGCCAACAAGCC
GCGTCAGGCAATTTCAGGGATGGAGATCATTGCAGTAGAGCGCTTGCAGGATGCGGTAACCTATCTGCGCGAGCACGGGT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

100

0.497
  radA Streptococcus pneumoniae Rx1

46.358

100

0.464
  radA Streptococcus pneumoniae D39

46.358

100

0.464
  radA Streptococcus pneumoniae R6

46.358

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.358

100

0.464
  radA Streptococcus mitis SK321

46.358

100

0.464
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461

Multiple sequence alignment