Detailed information NTG1055457

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: LMH68_RS10930
• Genome accession: NZ_CP170175
• Coordinates: 2346304..2349693 (-)
• Length: 1129 a.a.
• NCBI ID: WP_017063266.1
• Uniprot ID: A0A0T7D589
• Organism: Vibrio sp. F13 strain 10N.222.55.B3
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2341304..2354693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LMH68_RS10915 (LMH68_010915)	-	2341737..2342762 (-)	1026	WP_017056648.1	ABC transporter permease	-
LMH68_RS10920 (LMH68_010920)	-	2342765..2343751 (-)	987	WP_017059409.1	ABC transporter permease	-
LMH68_RS10925 (LMH68_010925)	-	2343921..2345603 (-)	1683	WP_017056650.1	ABC transporter substrate-binding protein	-
LMH68_RS10930 (LMH68_010930)	chiS	2346304..2349693 (-)	3390	WP_017063266.1	response regulator	Regulator
LMH68_RS10935 (LMH68_010935)	rsmC	2349910..2350932 (-)	1023	WP_017059407.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
LMH68_RS10940 (LMH68_010940)	-	2351043..2352128 (-)	1086	WP_017059406.1	AI-2E family transporter	-
LMH68_RS10945 (LMH68_010945)	-	2352205..2352330 (+)	126	WP_004734537.1	hypothetical protein	-
LMH68_RS10950 (LMH68_010950)	hemL	2352472..2353767 (-)	1296	WP_010436060.1	glutamate-1-semialdehyde 2,1-aminomutase	-
LMH68_RS10955 (LMH68_010955)	erpA	2354064..2354405 (+)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127164.78 Da
• Isoelectric Point: 5.2626

>NTDB_id=1055457 LMH68_RS10930 WP_017063266.1 2346304..2349693(-) (chiS) [Vibrio sp. F13 strain 10N.222.55.B3]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGITFQRLAKDVTDRRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTLDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMQLIKSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDAS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQDELDSYNESGHYSHFQAPDLIDNSQQENSVISENP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDAMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=1055457 LMH68_RS10930 WP_017063266.1 2346304..2349693(-) (chiS) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGCTGGCATTTCTTGTCCTCAGTATTAC
CCCTGTGACACTTATCGCGATATTTTTCCTCCAATCGCACAGTCAGGATCTCCAGGAACAAAGCACCTCACACCTTGTTT
CGGTTCGTGATACTAAGCAGCAGCAAATTGTCGATTACCTACAAGCTCAAGAATCCCAAGTGATGGGCTTTGTTCGCTCA
GAATTGGCCAATGCCAGTGGCGGGCGATTTTATGGTTTGATCAATGCATTTCAACGATTGGGGTTAGATATTGACGAGGC
ACGCAGTAATGCACAGCAGCGCTATATTCAAGGCTCTGGCGATCAAATCAAAACGTCGATCCTCCCTGAATCCAGCAGCT
TTATTGGCAGCGAGCGTTATCGCCTGCTCCACAAGCGCTACCATAATGCTTACCTAGAACTGCTTAAACGCTCTGATTTT
GACGATATTCTCTTAGTTGATATCAACGGTAACGTCGCTTATTCCGTCTTTAAAAATGACGATTACGGCACCAATCTGCT
GACAGGAAAATACAAGGACTCCAACCTAGGTATTACCTTTCAACGACTAGCCAAAGACGTAACCGACCGACGCAAATCTA
ACGAAGATTACACGCCGGTTATCGTTTCTGACTTTAAAGACGAGAATGGCAAACAGACCGCATGGCTAGGCGCACCTATC
GTTCAACAAGGCTACCTACACAGTTACGCGATGTTTAGGCTACCAATCAACGGCATTACTAAGTTGATTGCGGATCTCAA
CAAGAGTTCGAATATTCAAACGCTGCTTGTAGGTGATGATCACCTGCCGCGTAGCCTTGCTCATTCACAAGAATCTATCA
ACTTGAGCCTTGATGTTGTCGATAAAGCATTGGCTGGCGAAACAGCGGTTGGCACCTTCGACAACACCCTAGATCAAGCG
ATCATCGCGGCATATACGCCAATTGAACTGAAATACGCAACATGGGCTCTTGTCGTAGAGCTGCCAGAGAAAGAGGCGTT
TGCCCGTATTCATCAGTTAGAAAAGATCTTCGTGATCGTGATGCTAACGGCGATCATTCTGGTAGTCGTTGCATCGCACT
ATCTGTCTAACTTCATCACATCCCCACTGCTTAAACTGACGTGGGCTGCCGAAAAAGTATCGGCGGGTGATCTCGATGAA
ACCATGATCAATACCGAGCGCAAAGATGAGATAGGCCGACTCGCGGTGAGCTTCGAAAGAATGCAGCGATCTATTCGTGA
AAAAATGCAGCTCATCAAAAGCCAAAACGATGAGCTTGAGGACAACCTTAAGACCATTCAAAAGCAAAACGAAGAGTTAC
AACTGGCAAATAAACTCAAAGATGAGTTCTTAGCGACTACTTCACATGAATTGAGAACACCACTGCATGGCATGGTGGGT
ATCGCTGAAGCGTTGATATCTGGAGCTAACGGCCCTATTCCTGCTAATCAGAAATATCAGTTGGATATCATCATCAATAG
CGGTCAGAGATTGGCGACCTTGGTTGATGATCTGCTTGATTATCACAAGATGCGCTATGGCAGCTTAGATATTAAGAAAT
CAGCCGTTGATTTGTCGGCAGCCACCAGCTTGGTCCTAGAGTTGTCTCATCACCTATTGGGCAATAAGCCAATCCGTATT
ATTAACCAAGTCCCAAGTGATTTAGGTCTGGTTTCATCGGATCCTCAACGACTTGAGCAAGTGATGTATAACTTGGTCGG
CAATGCCATCAAGTACACCTCAGAAGGTAAAATTGTTATCTCTGCCAGCGTTATCGATGACAACATTCGTGTACAAGTTG
TCGATACTGGCCAAGGTATACCGGCCGAGTACCTTGAGCACATCTTTGAGCCATTGATTCAAGCAGGCCAAGATGCGAGT
AACTACCGCCAAGGTGCAGGGCTTGGATTATCGATCAGTCGTCAGTTGATCGAGCTAATGGGCGGTTCACTGTACGTTAG
TAGCCAACCAATGCTCGGCACTACGTTTAGCTTTACCCTGCCCCTAGCTACTCAAGATGAGTTAGACAGTTACAACGAAT
CAGGTCACTACTCGCACTTCCAAGCGCCTGATTTAATTGATAACAGCCAACAAGAAAATAGTGTTATCAGTGAAAACCCA
GATGGCCCGTTATTGGTTATCGCCGATGATGAGCCGGTTAACCTGCGAGTATTAGACAGCTTCTTGAAGTTAGAAGGTTA
TCGAGTACGTACTGCATGTGATGGCCCTGAAACCATTGAACTGATTGAGAAAGAGAAGCCAGAGCTGCTTCTACTCGACA
TCATGATGCCAGGAATGAGCGGCTATCAGGTTTGTGAAGCACTGCGTAAGCAATACGATCATGCTCAGTTGCCAATCATC
ATGCTAACGGCACTCAACCAAGCAGAAGACCGTGTTCGAGGTTTCGAAGCTGGCGCCAATGACTACTTGTCTAAACCGTT
CAACAAACAAGAACTAGCGGCTCGAATTACAGCACATCTATCAGCAAGCAAAGCTGAACAAAGACGCCTTGAAAACGACC
AACTGCAACTCGAGCTCAAACATAGAGCGATGGTTGAGGCTAACTTGTTAGAAACTCAAGGCCGCTTATTAGAGCAACTA
GAATCGGCACCTGAAGCCATCATCTGTATTCGTGACGACCAACGTATTCGCTTTGCTAACGAAGCTGCGGCGAAGCTATT
CAGACGCGGACAAGAACAACTTAAACGCTCAATGGCCGACGAGATCATTGCGCCTAAATACCTTAAGGTAGAACAAGCCC
ACTACTGCGGTGATATTGATATCTATATAGACGATACACGTCAGCGCATACCAAGTGACATCCTTAAGCTGCCTGAAGGC
TCAGGGCTCGACACCATGTATATCTTCAATGTAGGTGGTGGTGTTAACTCAAACCGAATCAATAACCTTGAAACGGCGGT
TGAGGCTCTCTCTAGTTATGCCTTTGAAGGCGACAAAGATAAGTTACAGCAGCTGAAAGAGCTTGGCGGAGAATTTACTC
GTCTTGCTGACAAGGCAACCGGTGAAGGTAAAAACAAGCAAGAGTTAATGCGTGAGGTACTGGTCGATGCGATGACGAAT
GCCATCATCTACTGGGAATCGGTGACTGGTGAAACCAAGTTTGCTTTCGCCGAGAAGAGTGGCTTGTGGCGCGTCTACTT
AGACCGCAGTACGCTGCAAACTCGAACGCTAGACAAATACCTACGCGTAGAAACCCTACCGAAAACGCCTCGCTGGCGAA
CGGTACTGAGCTCAATCGAATTCATTCTGGAACACTGCAAAGAACAGACGCCAGAAAGAACCCATATTGAGATGCTGAGG
GATAAACTTCAGAAACTACTGACCAGTTAA

Domains

Predicted by InterproScan.

• PAS domain (PAS_8) (880-914)

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• HAMP domain (HAMP) (375-427)

3D structure

• AlphaFold DB: A0A0T7D589

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.616	100	0.766