Detailed information NTG1055449

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LMH68_RS10520
• Genome accession: NZ_CP170175
• Coordinates: 2253067..2254047 (+)
• Length: 326 a.a.
• NCBI ID: WP_017059027.1
• Uniprot ID: A0A1E5FN76
• Organism: Vibrio sp. F13 strain 10N.222.55.B3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2248067..2259047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LMH68_RS10490 (LMH68_010490)	ispD	2248314..2249015 (+)	702	WP_017059032.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LMH68_RS10495 (LMH68_010495)	ispF	2249018..2249497 (+)	480	WP_004739053.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LMH68_RS10500 (LMH68_010500)	truD	2249520..2250566 (+)	1047	WP_229648156.1	tRNA pseudouridine(13) synthase TruD	-
LMH68_RS10505 (LMH68_010505)	surE	2250648..2251391 (+)	744	WP_017059030.1	5'/3'-nucleotidase SurE	-
LMH68_RS10510 (LMH68_010510)	-	2251392..2252018 (+)	627	WP_017059029.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LMH68_RS10515 (LMH68_010515)	nlpD	2252054..2252968 (+)	915	WP_229648155.1	murein hydrolase activator NlpD	-
LMH68_RS10520 (LMH68_010520)	rpoS	2253067..2254047 (+)	981	WP_017059027.1	RNA polymerase sigma factor RpoS	Regulator
LMH68_RS10525 (LMH68_010525)	mutS	2254188..2256749 (-)	2562	WP_017059026.1	DNA mismatch repair protein MutS	-
LMH68_RS10530 (LMH68_010530)	pncC	2256874..2257368 (+)	495	WP_229648169.1	nicotinamide-nucleotide amidase	-
LMH68_RS10535 (LMH68_010535)	recA	2257508..2258548 (+)	1041	WP_017056586.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37218.43 Da
• Isoelectric Point: 5.1506

>NTDB_id=1055449 LMH68_RS10520 WP_017059027.1 2253067..2254047(+) (rpoS) [Vibrio sp. F13 strain 10N.222.55.B3]
MSISNAVTKEEFDLDQATTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1055449 LMH68_RS10520 WP_017059027.1 2253067..2254047(+) (rpoS) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGTTTAGATGCCACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTATATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTAGTGGTAAAAATTTCACGTCGTTATAGCAACCGCGGCCT
TGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAGTTTGATCCAGAGCGTGGCTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGTTAATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGTTAGATAAGCCGGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCGCTGTTGGATATTATTCCAGACATCAATAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGACTACTGGGTTATGAACCGTCAACATTAGAAGAAGTGGGCCGCGAAATCAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGTCTGAATATGGAAAACCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

3D structure

• AlphaFold DB: A0A1E5FN76

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.737	100	0.837