Detailed information NTG1055439

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LMH68_RS09210
• Genome accession: NZ_CP170175
• Coordinates: 2011206..2012210 (-)
• Length: 334 a.a.
• NCBI ID: WP_048605405.1
• Uniprot ID: A0A4U2D2Z2
• Organism: Vibrio sp. F13 strain 10N.222.55.B3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2006206..2017210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LMH68_RS09180 (LMH68_009180)	zapB	2006357..2006599 (+)	243	WP_008219652.1	cell division protein ZapB	-
LMH68_RS09185 (LMH68_009185)	rraA	2006697..2007215 (-)	519	WP_102333889.1	ribonuclease E activity regulator RraA	-
LMH68_RS09190 (LMH68_009190)	-	2007289..2008206 (-)	918	WP_017061151.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LMH68_RS09195 (LMH68_009195)	hslU	2008362..2009702 (-)	1341	WP_017061150.1	HslU--HslV peptidase ATPase subunit	-
LMH68_RS09200 (LMH68_009200)	hslV	2009761..2010309 (-)	549	WP_004729692.1	ATP-dependent protease subunit HslV	-
LMH68_RS09205 (LMH68_009205)	ftsN	2010544..2011083 (-)	540	WP_229647416.1	cell division protein FtsN	-
LMH68_RS09210 (LMH68_009210)	cytR	2011206..2012210 (-)	1005	WP_048605405.1	DNA-binding transcriptional regulator CytR	Regulator
LMH68_RS09215 (LMH68_009215)	priA	2012451..2014652 (-)	2202	WP_229647417.1	primosomal protein N'	-
LMH68_RS09220 (LMH68_009220)	rpmE	2014985..2015203 (+)	219	WP_407834094.1	50S ribosomal protein L31	-
LMH68_RS09225 (LMH68_009225)	-	2015538..2016845 (+)	1308	WP_229647418.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36571.11 Da
• Isoelectric Point: 6.4911

>NTDB_id=1055439 LMH68_RS09210 WP_048605405.1 2011206..2012210(-) (cytR) [Vibrio sp. F13 strain 10N.222.55.B3]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQETKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide

• Length: 1005 bp

>NTDB_id=1055439 LMH68_RS09210 WP_048605405.1 2011206..2012210(-) (cytR) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCGACTCGCAAACGAGTGGAAACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCTTATTTCGCCGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGATTACCTTGTTCTACTGGGTGATAGCGGCCAGCAAAAGAAGCGCGAGTCTTCGTT
TGTTAACTTAGTTTTCACCAAACAAGCCGACGGCATGTTGCTGCTGGGTACTGACCATCCGTTTGATGTCAGCAAACCTG
AACAAAAGAATTTACCGCCGATGGTAATGGCGTGTGAGTTTGCCCCTGAGCTTGAACTGCCTACGGTACACATCGATAAC
CTGACCTCTGCCTTTGAAGCGGTGAACTACCTAGCTCAGTTAGGTCATAAGCGTATTGCTCAAATTTCAGGACCAGTATC
GGCAACACTGTGTAAGTTCCGCCAACAAGGCTACCAGCAAGCGCTGCGTCGCGCCGGAGTCTCAATGAATCCAGCCTATA
GCACGGTCGGTGACTTCACCTTTGAAGCGGGCGCTCAAGCGGTTCGTCAATTACTGGCACTTCCTGAACAACCTACAGCT
ATCTTCTGTCACAACGATGCGATGGCGATTGGTGCGATTCAAGAAACGAAGAAGCTGGGCTTGCGCGTTCCTCAAGACCT
ATCGATTGTCGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACCATTTCTCAGCCTCGTTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTATTAAAAGGCAACGATGTGCAAGCAGGTTCGCGTCTACTTGAA
GCTAAATTAGTCGTTAGAGGCAGCACCGCACCACCTCGAATGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

3D structure

• AlphaFold DB: A0A4U2D2Z2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.458	99.401	0.889
cytR	Vibrio parahaemolyticus RIMD 2210633	87.387	99.701	0.871