Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8567_RS02265 Genome accession   NZ_AP028407
Coordinates   445421..446389 (-) Length   322 a.a.
NCBI ID   WP_002821864.1    Uniprot ID   -
Organism   Campylobacter coli strain IDH-11847     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440421..451389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8567_RS02245 (I11847_04330) - 441936..442568 (-) 633 WP_002810397.1 membrane protein -
  R8567_RS02250 (I11847_04340) - 442734..443723 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  R8567_RS02255 (I11847_04350) - 443738..444493 (-) 756 WP_002785724.1 ABC transporter ATP-binding protein -
  R8567_RS02260 (I11847_04360) - 444490..445428 (-) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  R8567_RS02265 (I11847_04370) ceuB 445421..446389 (-) 969 WP_002821864.1 ABC transporter permease Machinery gene
  R8567_RS02270 (I11847_04380) - 446522..447415 (-) 894 WP_225847699.1 phospholipase A -
  R8567_RS02275 (I11847_04390) - 447514..448089 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  R8567_RS02280 (I11847_04400) - 448152..449459 (+) 1308 WP_317646523.1 NFACT family protein -
  R8567_RS02285 (I11847_04410) - 449462..449800 (+) 339 WP_002777761.1 hypothetical protein -
  R8567_RS02290 (I11847_04420) - 449809..450534 (+) 726 WP_002783928.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35565.41 Da        Isoelectric Point: 9.5069

>NTDB_id=105543 R8567_RS02265 WP_002821864.1 445421..446389(-) (ceuB) [Campylobacter coli strain IDH-11847]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLIAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=105543 R8567_RS02265 WP_002821864.1 445421..446389(-) (ceuB) [Campylobacter coli strain IDH-11847]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GACTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTACATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTATTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.13

100

0.891

Multiple sequence alignment