Detailed information
Bioinformatically predicted
Overview
| Name | cqsA | Type | Regulator |
| Locus tag | LMH68_RS01435 | Genome accession | NZ_CP170175 |
| Coordinates | 307282..308463 (+) | Length | 393 a.a. |
| NCBI ID | WP_229647252.1 | Uniprot ID | - |
| Organism | Vibrio sp. F13 strain 10N.222.55.B3 | ||
| Function | induction of competence (predicted from homology) Competence regulation |
||
Genomic Context
Location: 302282..313463
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH68_RS01410 (LMH68_001415) | - | 302823..303817 (+) | 995 | Protein_279 | ABC transporter substrate-binding protein | - |
| LMH68_RS01415 (LMH68_001420) | ihfA | 303990..304286 (-) | 297 | WP_004734853.1 | integration host factor subunit alpha | - |
| LMH68_RS01420 (LMH68_001425) | - | 304736..304873 (+) | 138 | Protein_281 | GTP-binding protein | - |
| LMH68_RS01425 (LMH68_001430) | - | 304991..305722 (-) | 732 | Protein_282 | DMT family transporter | - |
| LMH68_RS01430 (LMH68_001435) | - | 305713..306999 (+) | 1287 | Protein_283 | PLP-dependent aminotransferase family protein | - |
| LMH68_RS01435 (LMH68_001440) | cqsA | 307282..308463 (+) | 1182 | WP_229647252.1 | alpha-hydroxyketone-type quorum-sensing autoinducer synthase | Regulator |
| LMH68_RS01440 (LMH68_001445) | - | 308614..310662 (-) | 2049 | WP_229647251.1 | response regulator | - |
| LMH68_RS01445 (LMH68_001450) | - | 310919..311734 (-) | 816 | WP_017059123.1 | TauD/TfdA dioxygenase family protein | - |
| LMH68_RS01450 (LMH68_001455) | - | 312045..312944 (-) | 900 | WP_229647250.1 | Vmh family MBL fold metallo-hydrolase | - |
Sequence
Protein
Download Length: 393 a.a. Molecular weight: 43809.95 Da Isoelectric Point: 6.8556
>NTDB_id=1055424 LMH68_RS01435 WP_229647252.1 307282..308463(+) (cqsA) [Vibrio sp. F13 strain 10N.222.55.B3]
MSDKTKNKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPQRNSVVMQSNDYLALSNNKQIQQAHQAAICEHDDNVVMS
AIFLQDDQSKPAFETKLANYVGMESCLLSQSGWAANIGLLQTICPTGTPVYIDFLAHMSLWEGIRAAGAVAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVQALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSRTLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKREALFNRAKSLTTGLKRIGFNIRSESQ
IVALECGNERNTERVRDFLEQRDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV
MSDKTKNKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPQRNSVVMQSNDYLALSNNKQIQQAHQAAICEHDDNVVMS
AIFLQDDQSKPAFETKLANYVGMESCLLSQSGWAANIGLLQTICPTGTPVYIDFLAHMSLWEGIRAAGAVAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVQALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSRTLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKREALFNRAKSLTTGLKRIGFNIRSESQ
IVALECGNERNTERVRDFLEQRDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV
Nucleotide
Download Length: 1182 bp
>NTDB_id=1055424 LMH68_RS01435 WP_229647252.1 307282..308463(+) (cqsA) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGAGTGATAAAACAAAAAACAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTGATTAC
CCAGAACCAAAGCCAGAAGCATTTAGTATTGGGTAAACGCCCCCAGCGTAATTCCGTTGTGATGCAGAGCAATGATTACT
TAGCGCTGTCAAACAACAAACAGATCCAACAAGCCCATCAAGCGGCGATCTGTGAGCACGATGACAACGTGGTGATGTCT
GCCATTTTCTTACAAGATGATCAGTCTAAACCTGCGTTCGAAACTAAGCTTGCGAACTATGTTGGAATGGAGAGCTGTTT
GCTTTCTCAATCGGGCTGGGCGGCCAATATTGGGCTATTGCAAACCATCTGTCCAACGGGCACACCTGTGTATATTGATT
TCCTTGCACACATGTCGCTATGGGAAGGGATTCGGGCTGCCGGCGCAGTTGCCCATCCGTTTATGCATAACAATATGAAT
CACCTACGCAAACAGTTAGAGCGCCACGGCTCAGGTGTCATTGTTGTCGACTCGGTTTACAGCACAATAGGCACCATTGC
CCCACTGCGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCGGTCGTCGTTGATGAATCCCATTCACTGGGTACAC
ATGGAGAGAATGGTGCAGGCTTAGTGCAAGCATTGGGGCTCACCAACCAAGTCGACTTCATCACCGTTAGCTTGGCAAAA
ACCTTTGCTTATCGCGCCGGGGCAATCCTTGGTCCTAAACAACTGTCTAGAACCTTGCCGTTTGTCGCGTACCCTGCGAT
TTTTAGCTCGACGGTGTTACCACAAGAGGTGGTTCGTTTAGAGAAAACGTTGGAGGTGATCAAAGGTGCGGAAGACAAAC
GAGAAGCCTTATTCAATCGGGCAAAATCGCTGACTACGGGGCTAAAGCGAATTGGCTTTAATATCCGCAGTGAGTCTCAA
ATTGTAGCGCTAGAGTGCGGCAATGAAAGAAACACTGAACGTGTGCGTGACTTCCTAGAACAGCGTGATGTGTTCGGTGC
AGTATTCTGCCGCCCTGCGACTGGCAAGAACAAAAACATCATCCGTTTTTCAGTGAATGCCGACATGACGCCAAGAGACA
TTGACCATGTGCTCACGGTTTGTCACGAAGCGTACCATCACCCCGAGTTAGAGTTCGTGTAA
ATGAGTGATAAAACAAAAAACAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTGATTAC
CCAGAACCAAAGCCAGAAGCATTTAGTATTGGGTAAACGCCCCCAGCGTAATTCCGTTGTGATGCAGAGCAATGATTACT
TAGCGCTGTCAAACAACAAACAGATCCAACAAGCCCATCAAGCGGCGATCTGTGAGCACGATGACAACGTGGTGATGTCT
GCCATTTTCTTACAAGATGATCAGTCTAAACCTGCGTTCGAAACTAAGCTTGCGAACTATGTTGGAATGGAGAGCTGTTT
GCTTTCTCAATCGGGCTGGGCGGCCAATATTGGGCTATTGCAAACCATCTGTCCAACGGGCACACCTGTGTATATTGATT
TCCTTGCACACATGTCGCTATGGGAAGGGATTCGGGCTGCCGGCGCAGTTGCCCATCCGTTTATGCATAACAATATGAAT
CACCTACGCAAACAGTTAGAGCGCCACGGCTCAGGTGTCATTGTTGTCGACTCGGTTTACAGCACAATAGGCACCATTGC
CCCACTGCGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCGGTCGTCGTTGATGAATCCCATTCACTGGGTACAC
ATGGAGAGAATGGTGCAGGCTTAGTGCAAGCATTGGGGCTCACCAACCAAGTCGACTTCATCACCGTTAGCTTGGCAAAA
ACCTTTGCTTATCGCGCCGGGGCAATCCTTGGTCCTAAACAACTGTCTAGAACCTTGCCGTTTGTCGCGTACCCTGCGAT
TTTTAGCTCGACGGTGTTACCACAAGAGGTGGTTCGTTTAGAGAAAACGTTGGAGGTGATCAAAGGTGCGGAAGACAAAC
GAGAAGCCTTATTCAATCGGGCAAAATCGCTGACTACGGGGCTAAAGCGAATTGGCTTTAATATCCGCAGTGAGTCTCAA
ATTGTAGCGCTAGAGTGCGGCAATGAAAGAAACACTGAACGTGTGCGTGACTTCCTAGAACAGCGTGATGTGTTCGGTGC
AGTATTCTGCCGCCCTGCGACTGGCAAGAACAAAAACATCATCCGTTTTTCAGTGAATGCCGACATGACGCCAAGAGACA
TTGACCATGTGCTCACGGTTTGTCACGAAGCGTACCATCACCCCGAGTTAGAGTTCGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| cqsA | Vibrio cholerae strain A1552 |
56.072 |
98.473 |
0.552 |