Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LMH68_RS01375 Genome accession   NZ_CP170175
Coordinates   295742..297166 (+) Length   474 a.a.
NCBI ID   WP_229647256.1    Uniprot ID   -
Organism   Vibrio sp. F13 strain 10N.222.55.B3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 290742..302166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH68_RS01355 (LMH68_001360) - 291426..292376 (+) 951 WP_017065511.1 hypothetical protein -
  LMH68_RS01360 (LMH68_001365) - 292381..293415 (-) 1035 WP_229647257.1 AraC family transcriptional regulator -
  LMH68_RS01365 (LMH68_001370) - 293586..294599 (+) 1014 WP_017070924.1 DUF2804 domain-containing protein -
  LMH68_RS01370 (LMH68_001375) - 294687..295535 (+) 849 WP_017059137.1 sterol desaturase family protein -
  LMH68_RS01375 (LMH68_001380) sbcB 295742..297166 (+) 1425 WP_229647256.1 exodeoxyribonuclease I Machinery gene
  LMH68_RS01380 (LMH68_001385) - 297192..297563 (+) 372 WP_004734867.1 CidA/LrgA family protein -
  LMH68_RS01385 (LMH68_001390) - 297566..298243 (+) 678 WP_017059134.1 LrgB family protein -
  LMH68_RS01390 (LMH68_001395) cdd 298530..299417 (+) 888 WP_229647255.1 cytidine deaminase -
  LMH68_RS01395 (LMH68_001400) purT 299585..300760 (+) 1176 WP_017070928.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  LMH68_RS01400 (LMH68_001405) - 300875..301528 (-) 654 WP_229647254.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54629.94 Da        Isoelectric Point: 4.8224

>NTDB_id=1055423 LMH68_RS01375 WP_229647256.1 295742..297166(+) (sbcB) [Vibrio sp. F13 strain 10N.222.55.B3]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMLGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1055423 LMH68_RS01375 WP_229647256.1 295742..297166(+) (sbcB) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCCGCTG
ATTACCTCCCTGCGCCTGAAGCTGCACTGATCACCCGTATCACACCACAAAAAGCGGCTTCACAAGGTCTCCCTGAGCCA
GAGTTTATCGCTAAGATCCATGCTGAGTTAGCGAAACCTAACACCACAAGCCTTGGCTACAACAGTATTCGATTTGATGA
TGAAGTAACGCGTTACACCTGTTACCGAAACTTCATCGACCCATATGCGTGGAGCTGGCAGAATGGCAACTCTCGTTGGG
ATTTATTAGATGTAATGCGCGCTGTTCACGCACTGCGTCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTACCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCGCAACCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTGAATGATCTGGTTGATATCGTAAACATGACACCATTAATGCACGTTTCAGGCATGTTAGGCCGTGACTGCAACTAC
ACCAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCGGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGAAAGGCTCTATACCAAACGCAGTGAACTGGGTGAAGACGAACTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGCCAACAATGCCTGAAAAACTTGGCACTGCTACGCGAACACCCTGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAACGCGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAACAGCGATGAACATCATTCGCGAAACTGACCCGAACAACTTGGCAGCTTTGGATATCACCTTTAGTGACGAA
CGAATTAAACCGTTACTGTTCCGTTACCGTGCGCGTAACTTCCCATGGACGCTCGACGAAGCTGAGCAATTGAAATGGGC
GAACCATTGTCGTGAGTTTTATGAGTGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAGTACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

76.744

99.789

0.766

Multiple sequence alignment