Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8567_RS01675 Genome accession   NZ_AP028407
Coordinates   329306..329617 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain IDH-11847     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324306..334617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8567_RS01665 (I11847_03180) - 324980..325618 (+) 639 WP_273947225.1 HAD family hydrolase -
  R8567_RS01670 (I11847_03190) nifJ 325722..329282 (+) 3561 WP_317646412.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8567_RS01675 (I11847_03200) ctsR 329306..329617 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8567_RS01680 (I11847_03210) ctsD 329595..331013 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8567_RS01685 (I11847_03220) ctsP 331006..331602 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  R8567_RS01690 (I11847_03230) - 331599..332195 (+) 597 WP_002779313.1 CDC27 family protein -
  R8567_RS01695 (I11847_03240) ctsE 332188..333750 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=105536 R8567_RS01675 WP_002779316.1 329306..329617(+) (ctsR) [Campylobacter coli strain IDH-11847]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105536 R8567_RS01675 WP_002779316.1 329306..329617(+) (ctsR) [Campylobacter coli strain IDH-11847]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment