Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DI45_RS04405 Genome accession   NZ_CP007560
Coordinates   840037..841107 (+) Length   356 a.a.
NCBI ID   WP_002984598.1    Uniprot ID   P0DH45
Organism   Streptococcus pyogenes strain NGAS743     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 835037..846107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI45_RS04385 (DI45_04575) - 836029..836727 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  DI45_RS04390 (DI45_04580) - 836825..837157 (+) 333 WP_002989745.1 putative DNA-binding protein -
  DI45_RS04395 (DI45_04585) ffh 837172..838734 (+) 1563 WP_002993302.1 signal recognition particle protein -
  DI45_RS04400 (DI45_04590) - 838869..839567 (-) 699 WP_014635476.1 XRE family transcriptional regulator -
  DI45_RS04405 (DI45_04595) xerS 840037..841107 (+) 1071 WP_002984598.1 tyrosine recombinase XerS Machinery gene
  DI45_RS04410 (DI45_04600) - 841806..842288 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  DI45_RS04415 (DI45_04605) citC 842377..843429 (+) 1053 WP_002991776.1 [citrate (pro-3S)-lyase] ligase -
  DI45_RS04420 (DI45_04610) - 843539..844933 (-) 1395 WP_047235271.1 oxaloacetate decarboxylase subunit alpha -
  DI45_RS04425 (DI45_04615) citX 844948..845526 (-) 579 WP_011054513.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41471.57 Da        Isoelectric Point: 9.5552

>NTDB_id=105530 DI45_RS04405 WP_002984598.1 840037..841107(+) (xerS) [Streptococcus pyogenes strain NGAS743]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=105530 DI45_RS04405 WP_002984598.1 840037..841107(+) (xerS) [Streptococcus pyogenes strain NGAS743]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATCTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0DH45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806

Multiple sequence alignment