Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   R8920_RS03170 Genome accession   NZ_AP028404
Coordinates   633467..634411 (-) Length   314 a.a.
NCBI ID   WP_317727044.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-11568     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 628467..639411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8920_RS03145 (B11568_06190) - 628570..629133 (+) 564 WP_002777235.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  R8920_RS03150 (B11568_06200) rfaD 629130..630083 (+) 954 WP_002796912.1 ADP-glyceromanno-heptose 6-epimerase -
  R8920_RS03155 (B11568_06210) rfaE1 630076..631461 (+) 1386 WP_317727043.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  R8920_RS03160 (B11568_06220) gmhA 631458..632018 (+) 561 WP_002796916.1 D-sedoheptulose 7-phosphate isomerase -
  R8920_RS03165 (B11568_06230) - 632030..633484 (+) 1455 WP_002791237.1 hypothetical protein -
  R8920_RS03170 (B11568_06240) waaF 633467..634411 (-) 945 WP_317727044.1 lipopolysaccharide heptosyltransferase II Regulator
  R8920_RS03175 (B11568_06250) - 634471..635292 (+) 822 WP_002844798.1 glycosyltransferase family 2 protein -
  R8920_RS03180 (B11568_06260) - 635335..636702 (+) 1368 WP_002844799.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  R8920_RS03185 (B11568_06270) gmd 636703..637842 (+) 1140 WP_002844800.1 GDP-mannose 4,6-dehydratase -
  R8920_RS03190 (B11568_06280) - 637835..638773 (+) 939 WP_002844801.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 36075.70 Da        Isoelectric Point: 10.2590

>NTDB_id=105525 R8920_RS03170 WP_317727044.1 633467..634411(-) (waaF) [Campylobacter coli strain BCH-11568]
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFRLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHIAAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKICPLKHHKCMKDLKPEMVLEKLKFDT

Nucleotide


Download         Length: 945 bp        

>NTDB_id=105525 R8920_RS03170 WP_317727044.1 633467..634411(-) (waaF) [Campylobacter coli strain BCH-11568]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCTCTTTCCTCTAAGATCATTTTGCATATCCTTAAGGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAGATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCTTAGGTTTAAACCCTGGAGCA
AGCTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTGA
AAAATCTTTGCAACAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCATATAGCTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAATGGTTTTAGAAAAATTAAAATTTGATACTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(108-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

88.424

99.045

0.876

Multiple sequence alignment