Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8920_RS02080 Genome accession   NZ_AP028404
Coordinates   418378..419346 (-) Length   322 a.a.
NCBI ID   WP_139884692.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-11568     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413378..424346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8920_RS02060 (B11568_03990) - 414893..415525 (-) 633 WP_002777778.1 membrane protein -
  R8920_RS02065 (B11568_04000) - 415691..416680 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  R8920_RS02070 (B11568_04010) - 416695..417450 (-) 756 WP_139884694.1 ABC transporter ATP-binding protein -
  R8920_RS02075 (B11568_04020) - 417447..418385 (-) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  R8920_RS02080 (B11568_04030) ceuB 418378..419346 (-) 969 WP_139884692.1 ABC transporter permease Machinery gene
  R8920_RS02085 (B11568_04040) - 419479..420372 (-) 894 WP_079749675.1 phospholipase A -
  R8920_RS02090 (B11568_04050) - 420471..421046 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  R8920_RS02095 (B11568_04060) - 421109..422416 (+) 1308 WP_072227341.1 NFACT family protein -
  R8920_RS02100 (B11568_04070) - 422419..422757 (+) 339 WP_002777761.1 hypothetical protein -
  R8920_RS02105 (B11568_04080) - 422766..423491 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35585.42 Da        Isoelectric Point: 9.5069

>NTDB_id=105519 R8920_RS02080 WP_139884692.1 418378..419346(-) (ceuB) [Campylobacter coli strain BCH-11568]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTSGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=105519 R8920_RS02080 WP_139884692.1 418378..419346(-) (ceuB) [Campylobacter coli strain BCH-11568]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGATGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTTCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894

Multiple sequence alignment