Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ACNUEE_RS11355 Genome accession   NZ_OZ197100
Coordinates   2340038..2340643 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 23S01245-7     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335038..2345643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEE_RS11325 rsmS 2335743..2335904 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  ACNUEE_RS11330 priC 2335918..2336445 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  ACNUEE_RS11335 ybaN 2336515..2336892 (+) 378 WP_001188905.1 DUF454 family protein -
  ACNUEE_RS11340 apt 2337045..2337596 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ACNUEE_RS11345 dnaX 2337725..2339656 (+) 1932 WP_089621275.1 DNA polymerase III subunit gamma/tau -
  ACNUEE_RS11350 ybaB 2339709..2340038 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ACNUEE_RS11355 recR 2340038..2340643 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ACNUEE_RS11360 htpG 2340753..2342627 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  ACNUEE_RS11365 adk 2342808..2343452 (+) 645 WP_001220233.1 adenylate kinase -
  ACNUEE_RS11370 hemH 2343584..2344546 (+) 963 WP_001250105.1 ferrochelatase -
  ACNUEE_RS11375 aes 2344543..2345502 (-) 960 WP_089621273.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1055147 ACNUEE_RS11355 WP_001195025.1 2340038..2340643(+) (recR) [Escherichia coli isolate 23S01245-7]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1055147 ACNUEE_RS11355 WP_001195025.1 2340038..2340643(+) (recR) [Escherichia coli isolate 23S01245-7]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGAGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGTCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment