Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ACNUDU_RS00605 Genome accession   NZ_OZ197099
Coordinates   112461..113306 (-) Length   281 a.a.
NCBI ID   WP_001825659.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00079-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 107461..118306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDU_RS00560 - 107716..107992 (+) 277 Protein_106 site-specific integrase -
  ACNUDU_RS00565 - 107985..108212 (+) 228 Protein_107 Abi family protein -
  ACNUDU_RS00570 rpsR 108449..108691 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  ACNUDU_RS00575 ssbA 108743..109246 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  ACNUDU_RS00580 rpsF 109267..109563 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  ACNUDU_RS00585 - 109807..109998 (+) 192 WP_001052481.1 hypothetical protein -
  ACNUDU_RS00590 ychF 110084..111181 (-) 1098 WP_001218731.1 redox-regulated ATPase YchF -
  ACNUDU_RS00595 - 111193..111396 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  ACNUDU_RS00600 - 111426..112307 (-) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  ACNUDU_RS00605 spo0J 112461..113306 (-) 846 WP_001825659.1 ParB/RepB/Spo0J family partition protein Regulator
  ACNUDU_RS00610 - 113969..115072 (+) 1104 WP_000655690.1 PLP-dependent transferase -
  ACNUDU_RS00615 metC 115069..116229 (+) 1161 WP_000175863.1 cystathionine beta-lyase MetC -
  ACNUDU_RS00620 - 116198..118039 (+) 1842 WP_000077324.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32797.86 Da        Isoelectric Point: 10.0554

>NTDB_id=1055023 ACNUDU_RS00605 WP_001825659.1 112461..113306(-) (spo0J) [Staphylococcus aureus isolate 23S00079-1]
MSELSKSEDQRITKTKDEQIKKIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=1055023 ACNUDU_RS00605 WP_001825659.1 112461..113306(-) (spo0J) [Staphylococcus aureus isolate 23S00079-1]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGAAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTAAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAGGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381

Multiple sequence alignment