Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACE6HX_RS11160 Genome accession   NZ_CP170098
Coordinates   2212856..2213191 (+) Length   111 a.a.
NCBI ID   WP_095285385.1    Uniprot ID   -
Organism   Bacillus pumilus strain X14-67     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2207856..2218191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE6HX_RS11140 (ACE6HX_11140) gcvT 2208334..2209431 (-) 1098 WP_106031002.1 glycine cleavage system aminomethyltransferase GcvT -
  ACE6HX_RS11145 (ACE6HX_11145) - 2209993..2211663 (+) 1671 WP_375565902.1 DEAD/DEAH box helicase -
  ACE6HX_RS11150 (ACE6HX_11150) - 2211678..2212475 (+) 798 WP_375565903.1 YqhG family protein -
  ACE6HX_RS11155 (ACE6HX_11155) - 2212658..2212822 (+) 165 WP_106031001.1 anti-repressor SinI family protein -
  ACE6HX_RS11160 (ACE6HX_11160) sinR 2212856..2213191 (+) 336 WP_095285385.1 transcriptional regulator SinR Regulator
  ACE6HX_RS11165 (ACE6HX_11165) tasA 2213259..2214059 (-) 801 WP_106071628.1 biofilm matrix protein TasA -
  ACE6HX_RS11170 (ACE6HX_11170) sipW 2214117..2214689 (-) 573 WP_066031752.1 signal peptidase I SipW -
  ACE6HX_RS11175 (ACE6HX_11175) tapA 2214741..2215268 (-) 528 WP_375565906.1 amyloid fiber anchoring/assembly protein TapA -
  ACE6HX_RS11180 (ACE6HX_11180) - 2215568..2215846 (+) 279 WP_375567698.1 DUF3889 domain-containing protein -
  ACE6HX_RS11185 (ACE6HX_11185) - 2215880..2216074 (-) 195 WP_024718846.1 YqzE family protein -
  ACE6HX_RS11190 (ACE6HX_11190) - 2216133..2216516 (-) 384 WP_034661288.1 competence type IV pilus minor pilin ComGG -
  ACE6HX_RS11195 (ACE6HX_11195) comGF 2216513..2217013 (-) 501 WP_034661289.1 competence type IV pilus minor pilin ComGF -
  ACE6HX_RS11200 (ACE6HX_11200) comGE 2216952..2217269 (-) 318 WP_375565908.1 competence type IV pilus minor pilin ComGE -
  ACE6HX_RS11205 (ACE6HX_11205) comGD 2217253..2217699 (-) 447 WP_066030666.1 competence type IV pilus minor pilin ComGD -
  ACE6HX_RS11210 (ACE6HX_11210) comGC 2217692..2217985 (-) 294 WP_375565911.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12959.51 Da        Isoelectric Point: 4.9956

>NTDB_id=1055021 ACE6HX_RS11160 WP_095285385.1 2212856..2213191(+) (sinR) [Bacillus pumilus strain X14-67]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1055021 ACE6HX_RS11160 WP_095285385.1 2212856..2213191(+) (sinR) [Bacillus pumilus strain X14-67]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937

Multiple sequence alignment