Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACE6HX_RS08620 Genome accession   NZ_CP170098
Coordinates   1738275..1738655 (+) Length   126 a.a.
NCBI ID   WP_060596689.1    Uniprot ID   -
Organism   Bacillus pumilus strain X14-67     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1733275..1743655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE6HX_RS08610 (ACE6HX_08610) - 1733764..1736907 (+) 3144 WP_106030938.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  ACE6HX_RS08615 (ACE6HX_08615) - 1737098..1738006 (+) 909 WP_066030857.1 serine protease -
  ACE6HX_RS08620 (ACE6HX_08620) nucA/comI 1738275..1738655 (+) 381 WP_060596689.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACE6HX_RS08625 (ACE6HX_08625) - 1738803..1739651 (+) 849 WP_066030856.1 STAS domain-containing protein -
  ACE6HX_RS08630 (ACE6HX_08630) - 1739685..1740227 (-) 543 WP_034660768.1 IseA DL-endopeptidase inhibitor family protein -
  ACE6HX_RS08635 (ACE6HX_08635) - 1740522..1740959 (+) 438 WP_034660769.1 hypothetical protein -
  ACE6HX_RS08640 (ACE6HX_08640) lexA 1741007..1741627 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  ACE6HX_RS08645 (ACE6HX_08645) yneA 1741787..1742098 (+) 312 WP_003211955.1 cell division suppressor protein YneA -
  ACE6HX_RS08650 (ACE6HX_08650) - 1742116..1742763 (+) 648 WP_003211322.1 recombinase family protein -
  ACE6HX_RS08655 (ACE6HX_08655) - 1742833..1743063 (+) 231 WP_034660771.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13796.47 Da        Isoelectric Point: 8.4984

>NTDB_id=1055017 ACE6HX_RS08620 WP_060596689.1 1738275..1738655(+) (nucA/comI) [Bacillus pumilus strain X14-67]
MGTLLGGFGEKHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISSYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1055017 ACE6HX_RS08620 WP_060596689.1 1738275..1738655(+) (nucA/comI) [Bacillus pumilus strain X14-67]
ATGGGCACGTTGTTAGGTGGATTTGGGGAGAAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGCCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACTAAACCTGGCTTTGACCGGGATGAGTGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGTGCGAGTGTTCAATATGTCAGCCCATCTGATAATAGGGGAGCAGGCTCATG
GGTTGGACACCAGATTAGCAGTTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment